net_dis_plot: Visulization of network distance, average distances are used...

In Guan06/mina: Microbial community dIversity and Network Analysis

Description

Visulization of network distance, average distances are used for tile plot.

Visulization of network distance, average distances are used for tile plot.

Usage

net_dis_plot(x, d = "BS", ...)

## S4 method for signature 'mina'
net_dis_plot(x, d = "BS", sig = TRUE)

Arguments

x	An object of 'mina' with slot 'dis_stat' defined.
d	The distance to be plotted, could be "BS" or "PM".
...	Additional parameters.
sig	If 'TRUE', indicating significant distance with gold guild.

Value

p The plotted figure.

p The plotted figure.

Examples

maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref")
maize <- fit_tabs(maize)
maize <- bs_pm(maize, group = "Compartment")
maize <- net_dis(maize, method = "Jaccard")
p <- net_dis_plot(maize)
maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref")
maize <- fit_tabs(maize)
maize <- bs_pm(maize, group = "Compartment")
maize <- net_dis(maize, method = "Jaccard")
p <- net_dis_plot(maize, d = "BS")

Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.