dmr: Dimensionality reduction of community dissimilarity /...

In Guan06/mina: Microbial community dIversity and Network Analysis

Description

Dimensionality reduction of community dissimilarity / distance for visulization.

Usage

dmr(x, k = 2)

Arguments

x	An object of class 'mina' with 'dis' defined or a distance matrix.
k	The dimension number after reduction.

Value

The dimentionality reduction results.

Examples

maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref")
maize <- fit_tabs(maize)
maize <- com_dis(maize, method = "bray")
maize <- dmr(maize)

Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.