subsetPeptideData: subsetPeptideData
In Gibbsdavidl/ProCoNA: Protein co-expression network analysis (ProCoNA).
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Given a matrix of peptide data, omit columns with excess missing data, specified by NAs.
Usage
1
subsetPeptideData(pepdat, numNAsAllowed = NULL, percentageNAsAllowed = 0.05)
Arguments
pepdat
The peptide matrix, with peptides in columns and samples in rows.
numNAsAllowed
The maximum count of missing values for each peptide (counts NAs).
percentageNAsAllowed
The percentage of missing data allowed for each peptide over samples.
Value
Returns a matrix.
Author(s)
David L Gibbs
Examples
1
2
data(ProCoNA_Data)
subsetPeptideData(peptideData, percentageNAsAllowed=0.2)
Gibbsdavidl/ProCoNA documentation built on May 8, 2019, 7:51 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Given a matrix of peptide data, omit columns with excess missing data, specified by NAs.
Usage
1 | subsetPeptideData(pepdat, numNAsAllowed = NULL, percentageNAsAllowed = 0.05)
|
Arguments
pepdat |
The peptide matrix, with peptides in columns and samples in rows. |
numNAsAllowed |
The maximum count of missing values for each peptide (counts NAs). |
percentageNAsAllowed |
The percentage of missing data allowed for each peptide over samples. |
Value
Returns a matrix.
Author(s)
David L Gibbs
Examples
1 2 | data(ProCoNA_Data)
subsetPeptideData(peptideData, percentageNAsAllowed=0.2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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