details-methods: Extract details from dreamletProcessedData

In GabrielHoffman/dreamlet: Scalable differential expression analysis of single cell transcriptomics datasets with complex study designs

Extract details from dreamletProcessedData

Description

Extract details from dreamletProcessedData

Usage

details(object)

## S4 method for signature 'dreamletProcessedData'
details(object)

## S4 method for signature 'dreamletResult'
details(object)

## S4 method for signature 'vpDF'
details(object)

Arguments

object

A dreamletProcessedData object

Value

Extract detailed information from some classes

Examples

library(muscat)
library(SingleCellExperiment)

data(example_sce)

# create pseudobulk for each sample and cell cluster
pb <- aggregateToPseudoBulk(example_sce,
  assay = "counts",
  cluster_id = "cluster_id",
  sample_id = "sample_id",
  verbose = FALSE
)

# voom-style normalization
res.proc <- processAssays(pb, ~group_id)

# For each cell type, number of samples retained,
# and variables retained
details(res.proc)

GabrielHoffman/dreamlet documentation built on Oct. 29, 2024, 4:04 a.m.