pathwayanalysis_declare_significant_clusters: Declare significant clusters in the output of pathway...
In FerrenaAlexander/FerrenaBulkRNAseq: Pipeline for analysis of bulkRNAseq data
View source: R/pathwayanalysis.R
pathwayanalysis_declare_significant_clusters R Documentation
Declare significant clusters in the output of pathway analysis function.
Description
Set the signficant clusters in the pathwayanalysis_out object. Will return an updated version of pathwayanalysis_out[3] object with significance (T/F)
Usage
pathwayanalysis_declare_significant_clusters(pathwayanalysis_out, sigclusts)
Arguments
pathwayanalysis_out
the output of pathwayanalysis function
sigclusts
vector of integers. the rows in pathwayanalysis_out[3] to use as significant clusters. If not provided, will declare clusters with > 10% of DEGs as significant.
Value
an updated pathwayanalysis_out object.
FerrenaAlexander/FerrenaBulkRNAseq documentation built on Oct. 16, 2022, 8:18 a.m.
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View source: R/pathwayanalysis.R
| pathwayanalysis_declare_significant_clusters | R Documentation |
Declare significant clusters in the output of pathway analysis function.
Description
Set the signficant clusters in the pathwayanalysis_out object. Will return an updated version of pathwayanalysis_out[3] object with significance (T/F)
Usage
pathwayanalysis_declare_significant_clusters(pathwayanalysis_out, sigclusts)
Arguments
pathwayanalysis_out |
the output of pathwayanalysis function |
sigclusts |
vector of integers. the rows in pathwayanalysis_out[3] to use as significant clusters. If not provided, will declare clusters with > 10% of DEGs as significant. |
Value
an updated pathwayanalysis_out object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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