Files in ETHZ-INS/scanMiR
scanMiR
.Rbuildignore
.github/workflows/check.yaml
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
R/KdModelList.R
R/KdModels.R
R/aggregation.R
R/data.R
R/misc.R
R/plotting.R
R/scanning.R
README.md
data/SampleKdModel.RData
data/SampleTranscript.RData
inst/CITATION
inst/NEWS
inst/docs/12mer.png
inst/docs/sitetypes.jpg
inst/docs/sticker.svg
man/KdModel.Rd
man/KdModelList-methods.Rd
man/KdModelList.Rd
man/SampleKdModel.Rd
man/SampleTranscript.Rd
man/aggregateMatches.Rd
man/assignKdType.Rd
man/conservation.Rd
man/dummyKdData.Rd
man/findSeedMatches.Rd
man/get3pAlignment.Rd
man/get8merRange.Rd
man/getKdModel.Rd
man/getKmers.Rd
man/getMatchTypes.Rd
man/getRandomSeq.Rd
man/getSeed8mers.Rd
man/plotKdModel.Rd
man/removeOverlappingRanges.Rd
man/viewTargetAlignment.Rd
tests/testthat.R
tests/testthat/test-KdModels.R
tests/testthat/test-aggregation.R
tests/testthat/test-scanning.R
vignettes/Kdmodels.Rmd
vignettes/scanning.Rmd
