writeMSA: Write a multiple sequence alignment in a phylip like format....

In DKMS-LSL/dr2s: Dual redundant reference sequencing

Description

Write a multiple sequence alignment in a phylip like format. Formatted for easily accessing positions and differences

Usage

writeMSA(aln, file = "", block.width = 50)

Arguments

aln	The alignment as a DNAStringSet.
file	The filename and path.
block.width	The block width of the resulting alignment.

Examples

## Not run: 
library(Biostrings)
msa <- DNAStringSet(c("AAA", "AGA", ))
print("TODO: write rep seq example which runs")

## End(Not run)

DKMS-LSL/dr2s documentation built on March 14, 2021, 2:46 p.m.