plotPileupCoverage: Plot pileup coverage

In DKMS-LSL/dr2s: Dual redundant reference sequencing

Description

Plot pileup coverage

Usage

plotPileupCoverage(
  x,
  threshold = 0.2,
  range = NULL,
  thin = 0.1,
  width = 1,
  label = "",
  drop.indels = FALSE,
  compareReference = FALSE
)

Arguments

x	A pileup object.
threshold	At which frequency do we visualise polymorphisms.
range	Which part along the x-axis do we plot.
thin	Plot only a fraction of the (non-polymorphic) positions.
width	Width of polymorphic positions.
label	Optional plot label.
drop.indels	Don't plot indels.

Value

A ggplot object.

Examples

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DKMS-LSL/dr2s documentation built on March 14, 2021, 2:46 p.m.