API for CityUHK-CompBio/HTSanalyzeR2
HTSanalyzeR2: An R package for functional annotation, network analysis and time series analysis of high-throughput data
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| Biogrid_HS_Interactome | Man page |
| Biogrid_HS_Mat | Man page |
| GOGeneSets | Man page Source code |
| GSCA | Man page Source code |
| GSCA-class | Man page |
| GSCABatch | Man page Source code |
| GSE33113_exp | Man page |
| GSE33113_label | Man page |
| GSE33113_limma | Man page |
| GSEA_fgsea | Source code |
| HTSanalyzeR2 | Man page |
| HTSanalyzeR2Pipe | Man page Source code |
| HTSanalyzeR4MAGeCK | Man page Source code |
| KeggGeneSets | Man page Source code |
| MSigDBGeneSets | Man page Source code |
| NWA | Man page Source code |
| NWA-class | Man page |
| NWABatch | Man page Source code |
| analyze | Man page |
| analyze,GSCA-method | Man page |
| analyze,NWA-method | Man page |
| analyzeGeneSetCollections | Source code |
| analyzeGscaTS | Man page Source code |
| analyzeNwaTS | Man page Source code |
| annotationConvertor | Man page Source code |
| appendGOTerm | Source code |
| appendGSTerms | Man page |
| appendGSTerms,GSCA-method | Man page |
| appendGSTermsTS | Man page Source code |
| appendKEGGTerm | Source code |
| appendLinks | Source code |
| appendMSigDBTerm | Source code |
| availableResults | Source code |
| biogridDataDownload | Source code |
| calcGSEA | Source code |
| calcGScoreCPP | Source code |
| calcHGTScore | Source code |
| cellHTS2OutputStatTests | Man page Source code |
| checkGSCAPara | Source code |
| combineResults | Source code |
| createLink | Source code |
| createLink_GO | Source code |
| createLink_KEGG | Source code |
| d13 | Man page |
| d25 | Man page |
| d7 | Man page |
| d7_gsca | Man page |
| d7_nwa | Man page |
| duplicateRemover | Man page Source code |
| extractEnrichMap | Man page |
| extractEnrichMap,GSCA-method | Man page |
| extractSubNet | Man page |
| extractSubNet,NWA-method | Man page |
| fetchGSCASeriesValues | Source code |
| fetchNWASeriesValues | Source code |
| forceGraph | Man page Source code |
| forceGraphOutput | Source code |
| geneListAnno | Source code |
| geneMatrix | Source code |
| generateGSCASummary | Source code |
| generateNWASummary | Source code |
| getInteractome | Man page |
| getInteractome,NWA-method | Man page |
| getLeadingEdge | Source code |
| getPara | Man page |
| getPara,GSCA-method | Man page |
| getPara,NWA-method | Man page |
| getResult | Man page |
| getResult,GSCA-method | Man page |
| getResult,NWA-method | Man page |
| getSummary | Man page |
| getSummary,GSCA-method | Man page |
| getSummary,NWA-method | Man page |
| getTopGeneSets | Man page |
| getTopGeneSets,GSCA-method | Man page |
| gscaTS | Man page |
| gseaPlots | Source code |
| gseaScores | Source code |
| interactome | Man page |
| interactome,NWA-method | Man page |
| interactomeNwaTS | Man page Source code |
| makeEmptyGraph | Source code |
| makeGSEAplots | Source code |
| namesToList | Source code |
| networkAnalysis | Source code |
| niceDomain | Source code |
| norm | Source code |
| nwaTS | Man page |
| paraCheck | Source code |
| plotGSEA | Man page |
| plotGSEA,GSCA-method | Man page |
| preprocess | Man page |
| preprocess,GSCA-method | Man page |
| preprocess,NWA-method | Man page |
| preprocessGscaTS | Man page Source code |
| preprocessNwaTS | Man page Source code |
| renderForceGraph | Source code |
| report | Man page |
| report,GSCA-method | Man page |
| report,NWA-method | Man page |
| reportAll | Man page Source code |
| summarize | Man page |
| summarize,GSCA-method | Man page |
| summarize,NWA-method | Man page |
| updateForceGraph | Source code |
| viewEnrichMap | Man page |
| viewEnrichMap,GSCA-method | Man page |
| viewGSEA | Man page |
| viewGSEA,GSCA-method | Man page |
| viewSubNet | Man page |
| viewSubNet,NWA-method | Man page |
| xn | Man page |
