extractData: Helper function to extract data matrix from phyloseq,...
In CenterForStatistics-UGent/combi: Compositional omics model based visual integration
extractData R Documentation
Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows
Description
Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows
Usage
extractData(data, logTransformGaussian = TRUE)
Arguments
data
The list of data objects, either matrix, phyloseq or ExpressionSet objects
logTransformGaussian
A boolean, should array data be logtransformed
Value
the raw data matrices, samples in the rows
Examples
data(Zhang)
matrixList = extractData(list("microbiome" = zhangMicrobio,
"metabolome" = zhangMetabo))
CenterForStatistics-UGent/combi documentation built on Aug. 22, 2023, 11:02 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| extractData | R Documentation |
Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows
Description
Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows
Usage
extractData(data, logTransformGaussian = TRUE)
Arguments
data |
The list of data objects, either matrix, phyloseq or ExpressionSet objects |
logTransformGaussian |
A boolean, should array data be logtransformed |
Value
the raw data matrices, samples in the rows
Examples
data(Zhang)
matrixList = extractData(list("microbiome" = zhangMicrobio,
"metabolome" = zhangMetabo))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.