sraToFastq: sraToFastq downloads and converts the sra files to fastq...
In CasedUgr/KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline
sraToFastq R Documentation
sraToFastq downloads and converts the sra files to fastq files. The function admits both gz and sra formats.
Description
This function downloads and converts the sra files to fastq files by using the URLs indicated through the identifier argument. The function admits both gz and sra formats. This function is used internally by rawAlignment but it can be used separatelly.
Usage
sraToFastq(identifier)
Arguments
identifier
A vector that contains a list with the URLs requested.
Value
Nothing.
Examples
# This function needs the download of the pre-compiled tools supplied by KnowSeq.
## Not run: sraToFastq("SRA1")
CasedUgr/KnowSeq documentation built on Aug. 16, 2022, 6:19 a.m.
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| sraToFastq | R Documentation |
sraToFastq downloads and converts the sra files to fastq files. The function admits both gz and sra formats.
Description
This function downloads and converts the sra files to fastq files by using the URLs indicated through the identifier argument. The function admits both gz and sra formats. This function is used internally by rawAlignment but it can be used separatelly.
Usage
sraToFastq(identifier)
Arguments
identifier |
A vector that contains a list with the URLs requested. |
Value
Nothing.
Examples
# This function needs the download of the pre-compiled tools supplied by KnowSeq.
## Not run: sraToFastq("SRA1")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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