gdcClientDownload: This function downloads a list of controlled files from GDC...

In CasedUgr/KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline

This function downloads a list of controlled files from GDC Portal with the user token and the manifest with the information about the desired controlled files.

Description

This function downloads a list of controlled files from GDC Portal with the user token and the manifest with the information about the desired controlled files.

Usage

gdcClientDownload(manifestPath, controlled = FALSE, tokenPath = "")

Arguments

manifestPath	Path to the samples manifest
controlled	Parameter that indicates if data to download are controlled or not
tokenPath	Path to the GDC token if data are controlled

Value

Nothing to return.

Examples

# This function needs the download of the pre-compiled tools supplied by KnowSeq.
## Not run: gdcClientDownload("PathToTheToken", "PathToTheFileWithDownloadInfo", dataMatrix)

CasedUgr/KnowSeq documentation built on Aug. 16, 2022, 6:19 a.m.