wellClassificationMethod: Retrieve the classification method.

In CRUKMI-ComputationalBiology/twoddpcr: Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules

Description

Retrieve the names of the classification methods for a ddpcrWell object.

Usage

wellClassificationMethod(theObject)

## S4 method for signature 'ddpcrWell'
wellClassificationMethod(theObject)

wellClassificationMethod(theObject, cMethod) <- value

## S4 replacement method for signature 'ddpcrWell'
wellClassificationMethod(theObject, cMethod) <- value

Arguments

theObject	A ddpcrWell object.
cMethod	If modifying the classification methods, this should be a vector of existing classification names or numbers.
value	A character vector (of the same length as cMethod) giving a new names for the chosen classification methods.

Value

The classification method names.

Author(s)

Anthony Chiu, [e-mail]

See Also

wellClassification for the classification of the droplets.

Examples

## Create a ddpcrWell object with some data and classification.
aWell <- ddpcrWell(well=KRASdata[["E03"]])

## Retrieve the classification method names.
head(wellClassificationMethod(aWell))

## Set a classification method name to something new.
wellClassificationMethod(aWell, cMethod="Cluster") <- "QuantaSoft"

## We check the classification now, showing the amplitudes as well.
wellClassificationMethod(aWell)

CRUKMI-ComputationalBiology/twoddpcr documentation built on Feb. 14, 2021, 9:18 p.m.