ScoreBins: Assign quality scores to each bin

In BlishLab/scriabin: Single-cell resolved interaction analysis through binning

Assign quality scores to each bin

Description

Assign quality scores to each bin

Usage

ScoreBins(seu, celltype.calls = NULL, split.by = NULL)

Arguments

seu	A binned Seurat object with bin identities in the "bin" column of meta.data
celltype.calls	Name of meta.data column containing the cell type labels to use for connectivity testing. Must be a finer (more granular) cell type label than used for coarse_cell_types in BinDatasets.
split.by	Meta.data column name indicating how data was split for interaction graph generation

Value

A named numeric vector of bin quality scores

BlishLab/scriabin documentation built on Sept. 16, 2024, 1:19 a.m.