FindAllInteractionPrograms: Find all interaction programs in a multi-sample dataset

In BlishLab/scriabin: Single-cell resolved interaction analysis through binning

Find all interaction programs in a multi-sample dataset

Description

Find all interaction programs in a multi-sample dataset

Usage

FindAllInteractionPrograms(seu, group.by = NULL, sim_threshold = 0.15, ...)

Arguments

seu	A Seurat object
group.by	Meta.data column name defining samples into which object should be split. Interaction programs will be found for each unique value in this column.
sim_threshold	During module merging from different samples, the Jaccard overlap index threshold above which modules will be merged. Default: 0.15
...	Additional arguments passed to InteractionPrograms

Value

Returns a list of length 4 with ligand-receptor covariance matrices, TOMs, modules, and intramodular connectivity for each sample.

BlishLab/scriabin documentation built on Sept. 16, 2024, 1:19 a.m.