Bioconductor package for integrative analysis with GDC data

.Rapp.history

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

NEWS

R/Pam50Info.R R/Stemness.R R/TCGAbiolinks-package.R R/TCGAbiolinks.R R/TumorPurityInfo.R R/analyze.R R/api.R R/biomart.R R/classifiers.R R/clinical.R R/download.R R/internal.R R/linkedOmics.R R/methylation.R R/prepare.R R/query.R

R/sysdata.rda

R/visualize.R README.md

TCGAbiolinks.Rproj

appveyor.yml

data/DE_PCBC_stemSig.rda

data/EB_PCBC_stemSig.rda

data/ECTO_PCBC_stemSig.rda

data/MESO_PCBC_stemSig.rda

data/SC_PCBC_stemSig.rda

data/TabSubtypesCol_merged.rda

data/Tumor.purity.rda

data/bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf.rda

data/chol_maf.rda

data/clinical.biotab.rda

data/dataBRCA.rda

data/dataDEGsFiltLevel.rda

data/dataREAD.rda

data/dataREAD_df.rda

data/datalist

data/gbm.exp.harmonized.rda

data/gbm.exp.legacy.rda

data/geneInfo.rda

data/geneInfoHT.rda

data/met.gbm.27k.rda

data/msi_results.rda

data/tabSurvKMcompleteDEGs.rda

inst/CITATION

man/.Rapp.history

vignettes/.install_extras

vignettes/BRCA_cluster.png

vignettes/BRCA_heatmap.png

vignettes/CIMP-highvsCIMP-low_metvolcano.png

vignettes/EAplot.png

vignettes/PCAtop200DEGs.png

vignettes/PreprocessingOutput.png

vignettes/_output.yaml

vignettes/_site.yml

vignettes/analysis.Rmd

vignettes/bibliography.bib

vignettes/case1_EA.png

vignettes/case1_dnet.png

vignettes/case2_Heatmap.jpg

vignettes/case2_surv.png

vignettes/case4_elmer.png

vignettes/casestudy.Rmd vignettes/classifiers.Rmd vignettes/clinical.Rmd vignettes/download_prepare.Rmd

vignettes/elmer1.png

vignettes/elmer2.jpg

vignettes/elmer3.png

vignettes/elmer4.png

vignettes/extension.Rmd

vignettes/figure4cluster.png

vignettes/figure4surv.png

vignettes/figure5exp.png

vignettes/figure5met.png

vignettes/figure5star.png

vignettes/include/after_body.html

vignettes/include/before_body.html

vignettes/include/header.html

vignettes/include/logo.png

vignettes/include/site.css

vignettes/include/symbol.png

vignettes/index.Rmd vignettes/mutation.Rmd

vignettes/oncoprint.png

vignettes/query.Rmd vignettes/stemness_score.Rmd vignettes/subtypes.Rmd

BioinformaticsFMRP/TCGAbiolinks documentation built on April 12, 2024, 2:08 a.m.

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BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Files in BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

R Package Documentation

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BioinformaticsFMRP/TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Files in BioinformaticsFMRP/TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

R Package Documentation

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We want your feedback!

BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Files in BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data