PlotPeaks: Total number of peaks detected and sequenced

In BioAlvaro/MQviewer: Quality Control of Protemics Data

Description

Total number of peaks detected and sequenced

Usage

PlotPeaks(
  MQCombined,
  long_names = FALSE,
  sep_names = NULL,
  position_dodge_width = 1,
  palette = "Set2"
)

Arguments

MQCombined	Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.
long_names	If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE.
sep_names	If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL.
position_dodge_width	Position of the columns within each others.
palette	The palette from the Package RColorBrewer. By default is 'Set2'.

Value

Plots the total number of peaks detected in the full scans and the total number of peaks sequenced by tandem MS.

Examples

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotPeaks(MQCombined)

BioAlvaro/MQviewer documentation built on Jan. 11, 2022, 8:25 p.m.