Files in ArnaudDroitLab/RJMCMC
Bayesian hierarchical model for genome-wide profiling of nucleosome positions based on high-throughput short-read data (MNase-Seq data)
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/RJMCMC.R
R/print.rjmcmcNucleosomes.R
R/print.rjmcmcNucleosomesMerge.R
R/rjmcmcMethod.R
R/rjmcmcMethodsIntern.R
README.md
data/RJMCMC_result.RData
data/reads_demo.RData
data/reads_demo_02.RData
data/syntheticNucleosomeReads.RData
inst/CITATION
inst/extdata/demo_vignette/result_01.rds
inst/extdata/demo_vignette/result_02.rds
inst/extdata/demo_vignette/result_03.rds
inst/extdata/demo_vignette/result_04.rds
inst/extdata/demo_vignette/result_05.rds
inst/extdata/demo_vignette/result_06.rds
inst/extdata/demo_vignette/result_07.rds
inst/extdata/demo_vignette/result_08.rds
inst/extdata/demo_vignette/result_09.rds
inst/extdata/demo_vignette/result_10.rds
inst/extdata/demo_vignette/result_11.rds
inst/extdata/demo_vignette/result_12.rds
inst/extdata/demo_vignette/result_13.rds
inst/extdata/demo_vignette/result_14.rds
inst/extdata/demo_vignette/result_15.rds
inst/extdata/demo_vignette/result_16.rds
inst/extdata/demo_vignette/result_17.rds
inst/extdata/demo_vignette/result_18.rds
inst/extdata/demo_vignette/result_19.rds
inst/extdata/demo_vignette/result_20.rds
inst/extdata/demo_vignette/result_21.rds
inst/extdata/demo_vignette/result_22.rds
inst/extdata/demo_vignette/result_23.rds
inst/extdata/demo_vignette/result_24.rds
inst/extdata/demo_vignette/result_25.rds
inst/extdata/demo_vignette/result_26.rds
inst/extdata/yeastRes_Chr1_Seg_002.rds
inst/extdata/yeastRes_Chr1_Seg_100.rds
inst/extdata/yeastRes_Chr1_Seg_101.rds
inst/unitTests/test_print_rjmcmcNucleosomes.R
inst/unitTests/test_print_rjmcmcNucleosomesMerge.R
inst/unitTests/test_rjmcmcMethod.R
inst/unitTests/test_rjmcmcMethodsIntern.R
man/Bk.Rd
man/Dk.Rd
man/RJMCMC.Rd
man/RJMCMC_result.Rd
man/birthMove.Rd
man/birthMoveK1.Rd
man/deathMove.Rd
man/elementWithHighestMode.Rd
man/mergeAllRDSFiles.Rd
man/mergeAllRDSFilesFromDirectory.Rd
man/mergeRDSFiles.Rd
man/mhMove.Rd
man/mhMoveK1.Rd
man/normal.mixture.Rd
man/postMerge.Rd
man/postTreatment.Rd
man/print.rjmcmcNucleosomes.Rd
man/print.rjmcmcNucleosomesMerge.Rd
man/priorMuDensity.Rd
man/reads_demo.Rd
man/reads_demo_02.Rd
man/rjmcmc-package.Rd
man/student.mixture.Rd
man/syntheticNucleosomeReads.Rd
man/tnormale.Rd
man/validateDirectoryParameters.Rd
man/validateParameters.Rd
man/validatePrepMergeParameters.Rd
man/validateRDSFilesParameters.Rd
rjmcmc.Rproj
tests/runTests.R
vignettes/rjmcmc.Rmd
vignettes/rjmcmc.bibtex
