map_cnv: This function maps cnv data to genes. The output of this...
In oncoPredict: Drug Response Modeling and Biomarker Discovery
map_cnv R Documentation
This function maps cnv data to genes. The output of this function is a .RData file called map.RData; this file contains theCnvQuantVecList_mat (rows are genes, and columns are samples) and tumorSamps (indicates which samples are primary tumor samples, 01A).
Description
This function maps cnv data to genes. The output of this function is a .RData file called map.RData; this file contains theCnvQuantVecList_mat (rows are genes, and columns are samples) and tumorSamps (indicates which samples are primary tumor samples, 01A).
Usage
map_cnv(Cnvs)
Arguments
Cnvs
The cnv data. A table with the following colnames: Sample (named using the TCGA patient barcode), Chromosome, Start, End, Num_Probes, and Segment_Mean.
Value
A .RData file called, map.RData, which stores two objects: theCnvQuantVecList_mat (rows are genes, columns are samples), tumorSamps (indicates which samples are primary tumor/01A). This output will serve as the input for test().
oncoPredict documentation built on May 29, 2024, 6:05 a.m.
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| map_cnv | R Documentation |
This function maps cnv data to genes. The output of this function is a .RData file called map.RData; this file contains theCnvQuantVecList_mat (rows are genes, and columns are samples) and tumorSamps (indicates which samples are primary tumor samples, 01A).
Description
This function maps cnv data to genes. The output of this function is a .RData file called map.RData; this file contains theCnvQuantVecList_mat (rows are genes, and columns are samples) and tumorSamps (indicates which samples are primary tumor samples, 01A).
Usage
map_cnv(Cnvs)
Arguments
Cnvs |
The cnv data. A table with the following colnames: Sample (named using the TCGA patient barcode), Chromosome, Start, End, Num_Probes, and Segment_Mean. |
Value
A .RData file called, map.RData, which stores two objects: theCnvQuantVecList_mat (rows are genes, columns are samples), tumorSamps (indicates which samples are primary tumor/01A). This output will serve as the input for test().
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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