data: data

In imcExperiment: Mass Cytometry S4 Class Structure Pipeline for Images

Description

Data set containing 1,000 cells and 73 features which include panel antibody, neighborhood computations, and phenograph clustering.

Usage

data(data)

Format

A data frame of 1,000 cells and histoCAT features

ImageId

feature from histoCAT

CellId

feature from histoCAT

marker1

feature from histoCAT

marker2

feature from histoCAT

marker3

feature from histoCAT

marker4

feature from histoCAT

marker5

feature from histoCAT

marker6

feature from histoCAT

marker7

feature from histoCAT

marker8

feature from histoCAT

marker9

feature from histoCAT

marker10

feature from histoCAT

marker11

feature from histoCAT

marker12

feature from histoCAT

marker13

feature from histoCAT

marker14

feature from histoCAT

marker15

feature from histoCAT

marker16

feature from histoCAT

marker17

feature from histoCAT

marker18

feature from histoCAT

marker19

feature from histoCAT

marker20

feature from histoCAT

marker21

feature from histoCAT

marker22

feature from histoCAT

marker23

feature from histoCAT

marker24

feature from histoCAT

marker25

feature from histoCAT

marker26

feature from histoCAT

marker27

feature from histoCAT

marker28

feature from histoCAT

marker29

feature from histoCAT

marker30

feature from histoCAT

marker31

feature from histoCAT

marker32

feature from histoCAT

marker33

feature from histoCAT

marker34

feature from histoCAT

Area

feature from histoCAT

Eccentricity

feature from histoCAT

Solidity

feature from histoCAT

Extent

feature from histoCAT

EulerNumber

feature from histoCAT

Perimeter

feature from histoCAT

MajorAxisLength

feature from histoCAT

MinorAxisLength

feature from histoCAT

Orientation

feature from histoCAT

X_position

feature from histoCAT

Y_position

feature from histoCAT

Percent_Touching

feature from histoCAT

Number_Neighbors

feature from histoCAT

neighbour_4_CellId1

feature from histoCAT

neighbour_4_CellId2

feature from histoCAT

neighbour_4_CellId3

feature from histoCAT

neighbour_4_CellId4

feature from histoCAT

neighbour_4_CellId5

feature from histoCAT

neighbour_4_CellId6

feature from histoCAT

neighbour_4_CellId7

feature from histoCAT

neighbour_4_CellId8

feature from histoCAT

neighbour_4_CellId9

feature from histoCAT

neighbour_4_CellId10

feature from histoCAT

Phenograph7851534969

feature from histoCAT

tSNE4148542692_1

feature from histoCAT

tSNE4148542692_2

feature from histoCAT

imcExperiment documentation built on Aug. 19, 2021, 5:07 p.m.