plotDensity.GenomeInformation: Plots the density of SNPs for a given chromosome

In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

Plots the density of SNPs for a given chromosome

Description

Plots the density of SNPs for a given chromosome.

Usage

## S3 method for class 'GenomeInformation'
plotDensity(this, chromosome, ..., adjust=1/20, xlab=NULL, main=NULL, annotate=TRUE)

Arguments

chromosome	The chromsome to be displayed.
...	Additional arguments passed to *getPositions().
adjust	A bandwidth parameter for the density estimator.
xlab	The label on the x-axis. If NULL, a default will generated.
main	The title of the plot. If NULL, a default will generated.
annotate	If TRUE, the plot is annotated with extra information.

Value

Returns (invisibly) the estimated density.

See Also

For more information see GenomeInformation.

aroma.affymetrix documentation built on May 29, 2024, 4:32 a.m.