AlleleSummation: The AlleleSummation class
In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

AlleleSummation

R Documentation

The AlleleSummation class

Description

Package: aroma.affymetrix
Class AlleleSummation

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--Model
~~~~~~~~~~~~|
~~~~~~~~~~~~+--UnitModel
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--AlleleSummation

Directly known subclasses:

public abstract static class AlleleSummation
extends UnitModel

This class takes allele-specific chip effect estimates of a SnpChipEffectSet and returns a CnChipEffectSet holding the summed allele estimates.

Usage

AlleleSummation(dataSet=NULL, ignoreNAs=TRUE, ...)

Arguments

`dataSet`	A `SnpChipEffectSet`.
`ignoreNAs`	If `TRUE`, missing values are excluded when summing the signals from the two alleles.
`...`	Arguments passed to `UnitModel`.

Fields and Methods

Methods:

	`findUnitsTodo`	-
	`getChipEffectSet`	-
	`process`	-

Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction, getParameters

Methods inherited from Model:
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis