ArrayExplorer: The ArrayExplorer class
In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

ArrayExplorer

R Documentation

The ArrayExplorer class

Description

Package: aroma.affymetrix
Class ArrayExplorer

Object
~~|
~~+--Explorer
~~~~~~~|
~~~~~~~+--ArrayExplorer

Directly known subclasses:

public abstract static class ArrayExplorer
extends Explorer

Usage

ArrayExplorer(csTuple=NULL, ...)

Arguments

`csTuple`	An `AffymetrixCelSet` object.
`...`	Not used.

Fields and Methods

Methods:

	`addColorMap`	-
	`getColorMaps`	-
	`getDataSet`	-
	`getSetTuple`	-
	`nbrOfChipTypes`	-
	`process`	-
	`setArrays`	-
	`setColorMaps`	-

Methods inherited from Explorer:
addIncludes, addIndexFile, as.character, display, getAlias, getArraysOfInput, getAsteriskTags, getFullName, getIncludePath, getMainPath, getName, getNameOfInput, getNames, getPath, getReportPathPattern, getRootPath, getSampleLayerPrefix, getSubname, getTags, getTagsOfInput, getTemplatePath, getVersion, nbrOfArrays, process, setAlias, setArrays, setReportPathPattern, setSubname, setup, splitByReportPathPattern, updateSetupExplorerFile

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis