UnitModel: The UnitModel class
In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

UnitModel

R Documentation

The UnitModel class

Description

Package: aroma.affymetrix
Class UnitModel

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--Model
~~~~~~~~~~~~|
~~~~~~~~~~~~+--UnitModel

Directly known subclasses:
AffineCnPlm, AffinePlm, AffineSnpPlm, AlleleSummation, AvgCnPlm, AvgPlm, AvgSnpPlm, ExonRmaPlm, FirmaModel, HetLogAddCnPlm, HetLogAddPlm, HetLogAddSnpPlm, MbeiCnPlm, MbeiPlm, MbeiSnpPlm, MultiArrayUnitModel, ProbeLevelModel, RmaCnPlm, RmaPlm, RmaSnpPlm, SingleArrayUnitModel

public abstract static class UnitModel
extends Model

This class is abstract and represents a generic unit model, i.e. a model that is applied to each unit separately.

Usage

UnitModel(dataSet=NULL, probeModel=c("pm", "mm", "pm-mm", "min1(pm-mm)", "pm+mm"),
  shift=0, ...)

Arguments

`dataSet`	An `AffymetrixCelSet` to which this model should be fitted.
`probeModel`	A `character` string specifying how PM and MM values should be modeled. By default only PM signals are used.
`shift`	An optional amount the signals should be shifted (translated) before fitting the model.
`...`	Arguments passed to the constructor of `Model`.

Fields and Methods

Methods:

	`findUnitsTodo`	-

Methods inherited from Model:
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis