SmoothRmaModel: The SmoothRmaModel class

In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

The SmoothRmaModel class

Description

Package: aroma.affymetrix
Class SmoothRmaModel

Object
~~|
~~+--ChromosomalModel
~~~~~~~|
~~~~~~~+--SmoothMultiarrayModel
~~~~~~~~~~~~|
~~~~~~~~~~~~+--SmoothRmaModel

Directly known subclasses:

public abstract static class SmoothRmaModel
extends SmoothMultiarrayModel

This class represents the Chromosomal Smoothing Robust Multichip Analysis method.

Usage

SmoothRmaModel(...)

Arguments

...	Arguments passed to the constructor of SmoothMultiarrayModel.

Fields and Methods

Methods:
No methods defined.

Methods inherited from SmoothMultiarrayModel:
as.character, createOutputTuple, fitOneChromosome, getAsteriskTags, getBandwidth, getFitUnitGroupFunction, getOutputTuple, getRootPath, setBandwidth

Methods inherited from ChromosomalModel:
as.character, fit, getAlias, getAromaGenomeTextFile, getAsteriskTags, getChipType, getChipTypes, getChromosomes, getFullName, getFullNames, getGenome, getGenomeData, getGenomeFile, getListOfAromaUgpFiles, getName, getNames, getParentPath, getPath, getReportPath, getRootPath, getSetTuple, getSets, getTags, indexOf, nbrOfArrays, nbrOfChipTypes, setChromosomes, setGenome, getListOfGenomeInformations, getPcuTheta, getPositionChipTypeUnit

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author(s)

Henrik Bengtsson

aroma.affymetrix documentation built on May 29, 2024, 4:32 a.m.