OpticalBackgroundCorrection: The OpticalBackgroundCorrection class

In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

The OpticalBackgroundCorrection class

Description

Package: aroma.affymetrix
Class OpticalBackgroundCorrection

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--Transform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ProbeLevelTransform
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--BackgroundCorrection
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--OpticalBackgroundCorrection

Directly known subclasses:

public static class OpticalBackgroundCorrection
extends BackgroundCorrection

This class represents "optical" background adjustment.

Usage

OpticalBackgroundCorrection(..., minimum=1)

Arguments

...	Arguments passed to the constructor of ProbeLevelTransform.
minimum	The minimum signal allowed after adjustment.

Fields and Methods

Methods:

	process	-

Methods inherited from BackgroundCorrection:
getParameters, process

Methods inherited from ProbeLevelTransform:
getRootPath

Methods inherited from Transform:
getOutputDataSet, getOutputFiles

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author(s)

Ken Simpson

aroma.affymetrix documentation built on May 29, 2024, 4:32 a.m.