GcContentNormalization2: The GcContentNormalization2 class
In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

GcContentNormalization2

R Documentation

The GcContentNormalization2 class

Description

Package: aroma.affymetrix
Class GcContentNormalization2

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--Transform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ChipEffectTransform
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--AdditiveCovariatesNormalization
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--GcContentNormalization2

Directly known subclasses:

public static class GcContentNormalization2
extends AdditiveCovariatesNormalization

This class represents a normalization method that corrects for annotation-data covariate effects on copy-number chip-effect estimates.

Usage

GcContentNormalization2(...)

Arguments

...

Arguments passed to the constructor of AdditiveCovariatesNormalization.

Fields and Methods

Methods:

	`plotCovariateEffects`	-

Methods inherited from AdditiveCovariatesNormalization:
getAsteriskTags, getCdf, getCovariates, getOutputDataSet00, getParameters, process

Methods inherited from ChipEffectTransform:
getRootPath

Methods inherited from Transform:
getOutputDataSet, getOutputFiles

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis