ChipEffectGroupMerge: The ChipEffectGroupMerge class
In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

ChipEffectGroupMerge

R Documentation

The ChipEffectGroupMerge class

Description

Package: aroma.affymetrix
Class ChipEffectGroupMerge

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--Transform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ChipEffectTransform
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--ChipEffectGroupMerge

Directly known subclasses:
SnpChipEffectGroupMerge

public static class ChipEffectGroupMerge
extends ChipEffectTransform

This class represents a method that merges chip effects across groups unit by unit.

Usage

ChipEffectGroupMerge(dataSet=NULL, fcn=NULL, ...)

Arguments

`dataSet`	A `ChipEffectSet`.
`fcn`	A `function` used to "merge" groups.
`...`	Additional arguments passed to the constructor of `ChipEffectTransform`.

Fields and Methods

Methods:

	`getCdf`	-
	`getMergeFunction`	-
	`process`	-
	`setMergeFunction`	-

Methods inherited from ChipEffectTransform:
getRootPath

Methods inherited from Transform:
getOutputDataSet, getOutputFiles

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis