luscSubset: DNA copy number data for lung squamous cell carcinoma.
In DiNAMIC.Duo: Finding Recurrent DNA Copy Number Alterations and Differences
luscSubset R Documentation
DNA copy number data for lung squamous cell carcinoma.
Description
A subset of the DNA copy number data from the TCGA lung
lung squamous cell carcinoma cohort.
Usage
luscSubset
Format
A numeric matrix of quantitative DNA copy number values with 3480 rows and 60 columns.
Rows are indexed by genes, and columns are indexed by samples. The entries are on the log
ratio scale and were produced by the GISTIC pipeline.
Details
The original data set downloaded from https://gdac.broadinstitute.org/
contained gene-level segmented DNA copy number values for 24776 genes and 501 samples
that were produced by the GISTIC pipeline. Because of the size limitations on data
in R packages, a random subset of genes and samples was selected. By construction,
the number of genes and samples in the lung squamous cell carcinoma data is different
than the number of genes and samples in the lung adenocarcinoma data.
Source
DiNAMIC.Duo documentation built on March 7, 2023, 8:38 p.m.
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| luscSubset | R Documentation |
DNA copy number data for lung squamous cell carcinoma.
Description
A subset of the DNA copy number data from the TCGA lung lung squamous cell carcinoma cohort.
Usage
luscSubset
Format
A numeric matrix of quantitative DNA copy number values with 3480 rows and 60 columns. Rows are indexed by genes, and columns are indexed by samples. The entries are on the log ratio scale and were produced by the GISTIC pipeline.
Details
The original data set downloaded from https://gdac.broadinstitute.org/ contained gene-level segmented DNA copy number values for 24776 genes and 501 samples that were produced by the GISTIC pipeline. Because of the size limitations on data in R packages, a random subset of genes and samples was selected. By construction, the number of genes and samples in the lung squamous cell carcinoma data is different than the number of genes and samples in the lung adenocarcinoma data.
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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