luadSubset: DNA copy number data for lung adenocarcinoma.
In DiNAMIC.Duo: Finding Recurrent DNA Copy Number Alterations and Differences
luadSubset R Documentation
DNA copy number data for lung adenocarcinoma.
Description
A subset of the DNA copy number data from the TCGA lung
lung adenocarcinoma cohort.
Usage
luadSubset
Format
A numeric matrix of quantitative DNA copy number values with 3475 rows and 65 columns.
Rows are indexed by genes, and columns are indexed by samples. The entries are on the log
ratio scale and were produced by the GISTIC pipeline.
Details
The original data set downloaded from https://gdac.broadinstitute.org/
contained gene-level segmented DNA copy number values for 24776 genes and 516 samples
that were produced by the GISTIC pipeline. Because of the size limitations on data
in R packages, a random subset of genes and samples was selected. By construction,
the number of genes and samples in the lung adenocarcinoma data is different than the
number of genes and samples in the lung squamous cell carcinoma data.
Source
DiNAMIC.Duo documentation built on March 7, 2023, 8:38 p.m.
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| luadSubset | R Documentation |
DNA copy number data for lung adenocarcinoma.
Description
A subset of the DNA copy number data from the TCGA lung lung adenocarcinoma cohort.
Usage
luadSubset
Format
A numeric matrix of quantitative DNA copy number values with 3475 rows and 65 columns. Rows are indexed by genes, and columns are indexed by samples. The entries are on the log ratio scale and were produced by the GISTIC pipeline.
Details
The original data set downloaded from https://gdac.broadinstitute.org/ contained gene-level segmented DNA copy number values for 24776 genes and 516 samples that were produced by the GISTIC pipeline. Because of the size limitations on data in R packages, a random subset of genes and samples was selected. By construction, the number of genes and samples in the lung adenocarcinoma data is different than the number of genes and samples in the lung squamous cell carcinoma data.
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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