extrProtDC: Dipeptide Composition Descriptor

In BioMedR: Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions

Description

Dipeptide Composition Descriptor

Usage

extrProtDC(x)

Arguments

x	A character vector, as the input protein sequence.

Details

This function calculates the Dipeptide Composition descriptor (Dim: 400).

Value

A length 400 named vector

Author(s)

Min-feng Zhu <[e-mail]>, Nan Xiao <http://r2s.name>

References

M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.

See Also

See extrProtTC for tripeptide composition descriptors.

Examples

x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtDC(x)

BioMedR documentation built on July 5, 2019, 9:03 a.m.