set_motifs: Set Transite motif database

In transite: RNA-binding protein motif analysis

Description

Globally sets Transite motif database, use with care.

Usage

set_motifs(value)

Arguments

value

list of Motif objects

Value

void

See Also

Other motif functions: generate_iupac_by_kmers(), generate_iupac_by_matrix(), generate_kmers_from_iupac(), get_motif_by_id(), get_motif_by_rbp(), get_motifs_meta_info(), get_motifs(), get_ppm(), init_iupac_lookup_table()

Examples

custom_motif <- create_kmer_motif(
  "custom_motif", "RBP1",
  c("AAAAAAA", "CAAAAAA"), "HITS-CLIP",
  "Homo sapiens", "user"
)
set_motifs(list(custom_motif))

transite documentation built on Nov. 8, 2020, 5:27 p.m.