Description Usage Format References
The Transite motif database contains sequence motifs and associated k-mers of more than 100 different RNA-binding proteins, obtained from publicly available motif databases.
1 |
A list of lists with the following components:
id | motif id |
rbps | gene symbols of RNA-binding proteins associated with motif |
matrix | data frame of sequence motif (position weight matrix) |
hexamers | all motif-associated hexamers |
heptamers | all motif-associated heptamers |
length | length of motif in nucleotides |
iupac | IUPAC string of sequence motif |
type | type of motif, e.g., RNAcompete |
species | usually human |
src | source of motif, e.g., RNA Zoo |
http://cisbp-rna.ccbr.utoronto.ca/
http://rbpdb.ccbr.utoronto.ca/
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