Files in synapter

Label-free data analysis pipeline for optimal identification and quantitation

R/gui.R R/fasta.R R/figures.R R/synapter-interface.R R/AllGenerics.R R/master.R R/utils.R R/MSnbase-extensions.R R/update.R R/exported_tools.R R/synapter-class.R R/readcsv-functions.R R/zzz.R R/fragmentlibrary-functions.R R/AllClasses.R R/fragmentmatching-functions.R R/requantify-functions.R R/fragments-functions.R R/synergise.R R/spectrum-functions.R vignettes/fragmentmatching.Rmd vignettes/Bugs.md vignettes/synapter.Rmd vignettes/Foreword.md vignettes/synapter2.Rmd man/synapterTinyData.Rd man/createUniquePeptideDbRds.Rd man/inspectPeptideScores.Rd man/MasterPeptides-class.Rd man/defunct.Rd man/MasterFdrResults-class.Rd man/plotCrossMatching.Rd man/synapter-package.Rd man/synapterPlgsAgreement.Rd man/rescaleForTop3.Rd man/Synapter.Rd man/synapterGuide.Rd man/estimateMasterFdr.Rd man/synergise.Rd man/synergise2.Rd man/requantify.Rd man/makeMaster.Rd tests/testthat.R tests/testthat/test_spectrum-functions.R tests/testthat/test_fragmentlibrary-functions.R tests/testthat/test_fragments-functions.R tests/testthat/test_master-functions.R tests/testthat/test_requantify.R tests/testthat/test_utils.R tests/testthat/test_readcsv-functions.R tests/testthat/test_MSnbase-extensions.R inst/doc/fragmentmatching.Rmd inst/doc/synapter2.R inst/doc/Bugs.md inst/doc/synapter.Rmd inst/doc/Foreword.md inst/doc/synapter.R inst/doc/synapter2.Rmd inst/doc/fragmentmatching.R inst/reports/synergise1.Rmd inst/reports/synergise2.Rmd inst/reports/scripts/synergise.R inst/scripts/run_test_report.R