snapcount-package: snapcount: an R package for interfacing with Snaptron

In snapcount: R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts

Description

snapcount is a client interface to the Snaptron webservice which supports querying by gene name or genomic region.

Details

Results include raw expression counts derived from alignment of RNA-seq samples and/or various summarized measures of expression across one or more regions/genes per-sample (e.g. percent spliced in).

To learn more about snapcount, check out the vignette: browseVignettes(package = "snapcount")

Package options

snapcount.host

Change the host that snapcount uses when connecting to Snaptron. Default: snaptron.cs.jhu.edu

snapcount.port

Change the port that snapcount uses when connecting to Snaptron. Default: 80

See Also

Useful links:

• https://github.com/langmead-lab/snapcount

• Report bugs at https://github.com/langmead-lab/snapcount/issues

snapcount documentation built on Nov. 8, 2020, 4:53 p.m.