get_regions: Get or set query regions
In snapcount: R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts
Description
Usage
Arguments
Value
Examples
View source: R/query_builder_wrappers.R
Description
Get or set query regions
Usage
1
2
3
get_regions(qb)
set_regions(qb, regions)
Arguments
qb
A QueryBuilder object constructed using the
QueryBuilder function.
regions
Either a list of 1 more HUGO gene names as strings
e.g. "BRCA1" or a Granges class object containing one or more geneomic
intervals (e.g. "chr1:1-1000").
Value
get_regions returns the current regions as a list of strings.
set_regions returns a new QueryBuilder object with the
regions set to the value of regions.
Examples
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3
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5
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qb <- QueryBuilder(compilation = "gtex", regions = "CD99")
get_regions(qb)
qb <- set_regions(qb, "chr1:1-1000")
get_regions(qb)
qb <- set_regions(qb, GenomicRanges::GRanges("chr1", "1-1000"))
get_regions(qb)
snapcount documentation built on Nov. 8, 2020, 4:53 p.m.
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Description Usage Arguments Value Examples
View source: R/query_builder_wrappers.R
Description
Get or set query regions
Usage
1 2 3 | get_regions(qb)
set_regions(qb, regions)
|
Arguments
qb |
A QueryBuilder object constructed using the
|
regions |
Either a list of 1 more |
Value
get_regions returns the current regions as a list of strings.
set_regions returns a new QueryBuilder object with the
regions set to the value of regions.
Examples
1 2 3 4 5 6 | qb <- QueryBuilder(compilation = "gtex", regions = "CD99")
get_regions(qb)
qb <- set_regions(qb, "chr1:1-1000")
get_regions(qb)
qb <- set_regions(qb, GenomicRanges::GRanges("chr1", "1-1000"))
get_regions(qb)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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