getSankey: Plot Sankey diagram comparing two clusterings
In scmap: A tool for unsupervised projection of single cell RNA-seq data

Description Usage Arguments Value Examples

Sometimes it is useful to see how the clusters in two different clustering solutions correspond to each other. Sankey diagram is a good way to visualize them. This function takes as input two clustering solutions and visualizes them using a Sankey diagram. The order of the reference clusters is defined by their labels in increasing order.

1 2	getSankey(reference, clusters, plot_width = 400, plot_height = 600, colors = NULL)

`reference`	reference clustering labels
`clusters`	clustering labels under investigations
`plot_width`	width of the output plot in pixels
`plot_height`	height of the output plot in pixels
`colors`	colors of the links between two clusterings. If defined please note that each cluster in the reference clustering has to have its own color. This should be a normal text vector, e.g. c('#FF0000', '#FFA500', '#008000')