plotDistance2Codon: Metaplot of P site distribution

In ribosomeProfilingQC: Ribosome Profiling Quality Control

Description

Metaplot of P site distribution in all the CDS aligned by the start codon or stop codon.

Usage

plotDistance2Codon(
  reads,
  start = TRUE,
  anchor = 50,
  col = c(Frame_0 = "#009E73", Frame_1 = "#D55E00", Frame_2 = "#0072B2")
)

Arguments

reads	Output of assignReadingFrame.
start	Plot for start codon or stop codon.
anchor	The maximal xlim or (min, max) position for plot.
col	Colors for different reading frame.

Value

Invisible height of the barplot.

Examples

pcs <- readRDS(system.file("extdata", "samplePc.rds",
               package="ribosomeProfilingQC"))
plotDistance2Codon(pcs)
#plotDistance2Codon(pcs, start=FALSE)
#plotDistance2Codon(pcs, anchor=c(-10, 20))

ribosomeProfilingQC documentation built on March 13, 2021, 2:01 a.m.