fluVaccine: Gene expression sets from Flu Vaccine trials

In qusage: qusage: Quantitative Set Analysis for Gene Expression

Description

fluVaccine is a list containing data from two separate Flu Vaccine treatment studies, GSE59635 and GSE59654. The top-level list contains two entries, esets and phenoData.

fluVaccine$esets is a list containing two expression matrices. Each matrix, which is labeled with the name of the GEO dataset it originates from, contains rows of gene expression levels and columns of samples.

fluVaccine$phenoData is a list containing two data frames. The rows of each data frame correspond to the columns in the expression matrices, and each data frame contains the following columns:

subjectID

The subject ID

responder

Factor describing the subject's response to flu vaccination, either "high" or "low".

bloodDrawDay

The day post-vaccination that the sample was taken.

Usage

  fluVaccine

Format

fluVaccine is a list.

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE59635 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE59654

References

Thakar J et al., Aging, 2015

qusage documentation built on Nov. 8, 2020, 8:09 p.m.