qsea-package: QSEA: Quantitative sequencing enrichment analysis and...

In qsea: IP-seq data analysis and vizualization

Description

QSEA (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides functionality for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.

Author(s)

Matthias Lienhard, Lukas Chavez and Ralf Herwig

Maintainer: Matthias Lienhard <[e-mail]>

References

Lienhard M, Grimm C, Morkel M, Herwig R, Chavez L., (Bioinformatics, 2014): MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments.

qsea documentation built on Nov. 8, 2020, 8:28 p.m.