example: Simulation of MeDIP seq QSEA set
In qsea: IP-seq data analysis and vizualization

Description Usage Arguments Details Value Author(s) See Also Examples

Creates a example qseaSet object by sampling reads for simulated Tumor and Normal samples. Number of replicates, sequencing depth and fraction of background reads can be specified.

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getExampleQseaSet(CpG=TRUE,CNV=TRUE,repl=2, 
    doSampling=TRUE,enrichmentAnalysis=TRUE, expSamplingDepth=50000, 
    bgfraction=.1)

`CpG`	if TRUE CpG density is added to the object
`CNV`	if TRUE CNV are emulated for the tumor samples
`repl`	number of replicates for tumor and normal samples
`doSampling`	if TRUE, read counts are sampled and added to the object
`enrichmentAnalysis`	if TRUE, parameters for enrichment profiles are added
`expSamplingDepth`	expected value of sequencing depth
`bgfraction`	fraction of background reads