testSurvival: Test the survival difference between groups of subjects

In psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Description

Test the survival difference between groups of subjects

Usage

testSurvival(survTerms, ...)

Arguments

survTerms

survTerms object: survival terms obtained after running processSurvTerms (see examples)

...

Arguments passed on to survival::survdiff subset expression indicating which subset of the rows of data should be used in the fit. This can be a logical vector (which is replicated to have length equal to the number of observations), a numeric vector indicating which observation numbers are to be included (or excluded if negative), or a character vector of row names to be included. All observations are included by default. na.action a missing-data filter function. This is applied to the model.frame after any subset argument has been used. Default is options()$na.action. rho a scalar parameter that controls the type of test. timefix process times through the aeqSurv function to eliminate potential roundoff issues.

Value

p-value of the survival difference or NA

Note

Instead of raising errors, returns NA

See Also

Other functions to analyse survival: assignValuePerSubject(), getAttributesTime(), labelBasedOnCutoff(), optimalSurvivalCutoff(), plotSurvivalCurves(), plotSurvivalPvaluesByCutoff(), processSurvTerms(), survdiffTerms(), survfit.survTerms()

Examples

require("survival")
data <- aml
timeStart  <- "event"
event      <- "event"
followup   <- "time"
data$event <- NA
data$event[aml$status == 1] <- aml$time[aml$status == 1]
censoring  <- "right"
formulaStr <- "x"
survTerms <- processSurvTerms(data, censoring=censoring, event=event,
                              timeStart=timeStart, followup=followup,
                              formulaStr=formulaStr)
testSurvival(survTerms)

psichomics documentation built on Nov. 8, 2020, 5:44 p.m.