index_targets: Index targets
In multicrispr: Multi-locus multi-purpose Crispr/Cas design
Description
Usage
Arguments
Value
Examples
Description
Bowtie index targets
Usage
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index_targets(
targets,
bsgenome = getBSgenome(genome(targets)[1]),
outdir = OUTDIR,
verbose = TRUE
)
Arguments
targets
GRanges-class
bsgenome
BSgenome-class
outdir
string: output directory
verbose
TRUE (default) or FALSE
Value
invisible(targetdir)
Examples
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require(magrittr)
bsgenome <- BSgenome.Mmusculus.UCSC.mm10::BSgenome.Mmusculus.UCSC.mm10
bedfile <- system.file('extdata/SRF.bed', package = 'multicrispr')
targets <- extend(bed_to_granges(bedfile, genome = 'mm10'))
index_targets(targets, bsgenome)
multicrispr documentation built on Nov. 8, 2020, 5:10 p.m.
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Description Usage Arguments Value Examples
Description
Bowtie index targets
Usage
1 2 3 4 5 6 | index_targets(
targets,
bsgenome = getBSgenome(genome(targets)[1]),
outdir = OUTDIR,
verbose = TRUE
)
|
Arguments
targets |
|
bsgenome |
|
outdir |
string: output directory |
verbose |
TRUE (default) or FALSE |
Value
invisible(targetdir)
Examples
1 2 3 4 5 | require(magrittr)
bsgenome <- BSgenome.Mmusculus.UCSC.mm10::BSgenome.Mmusculus.UCSC.mm10
bedfile <- system.file('extdata/SRF.bed', package = 'multicrispr')
targets <- extend(bed_to_granges(bedfile, genome = 'mm10'))
index_targets(targets, bsgenome)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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