motifHclust: Hierarchical Clustering motifs
In motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Description
Usage
Arguments
Value
Examples
Description
functions to perfom clustering of output of matalign
Usage
1
motifHclust(align, ...)
Arguments
align
output of matalign, used to generate distance matrix.
...
parameter to pass to the hclust.
Value
An object of hclust.
Examples
1
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if(interactive() || Sys.getenv("USER")=="jianhongou"){
fp <- system.file("extdata", package="motifStack")
fs <- dir(fp, "pcm$")
pcms <- importMatrix(file.path(fp, fs), format="pcm")
align <- matalign(pcms)
hc <- motifHclust(align, method="average")
}
Example output
Loading required package: grid
motifStack documentation built on Nov. 8, 2020, 7:43 p.m.
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Description Usage Arguments Value Examples
Description
functions to perfom clustering of output of matalign
Usage
1 | motifHclust(align, ...)
|
Arguments
align |
output of matalign, used to generate distance matrix. |
... |
parameter to pass to the hclust. |
Value
An object of hclust.
Examples
1 2 3 4 5 6 7 | if(interactive() || Sys.getenv("USER")=="jianhongou"){
fp <- system.file("extdata", package="motifStack")
fs <- dir(fp, "pcm$")
pcms <- importMatrix(file.path(fp, fs), format="pcm")
align <- matalign(pcms)
hc <- motifHclust(align, method="average")
}
|
Example output
Loading required package: grid
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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