importMatrix: import motifs from local files
In motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Import the motifs into pcm-class or pfm-class from files
exported from Transfac, CisBP, and JASPAR.
Usage
1
2
3
4
5
6
importMatrix(
filenames,
format = c("auto", "pfm", "cm", "pcm", "meme", "transfac", "jaspar", "scpd", "cisbp",
"psam"),
to = c("auto", "pcm", "pfm", "pssm", "psam")
)
Arguments
filenames
filename to be imported.
format
file format
to
import to pcm-class or pfm-class
Value
a list of object pcm-class or pfm-class
Author(s)
Jianhong Ou
Examples
1
2
path <- system.file("extdata", package = "motifStack")
importMatrix(dir(path, "*.pcm", full.names = TRUE))
motifStack documentation built on Nov. 8, 2020, 7:43 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Import the motifs into pcm-class or pfm-class from files exported from Transfac, CisBP, and JASPAR.
Usage
1 2 3 4 5 6 | importMatrix(
filenames,
format = c("auto", "pfm", "cm", "pcm", "meme", "transfac", "jaspar", "scpd", "cisbp",
"psam"),
to = c("auto", "pcm", "pfm", "pssm", "psam")
)
|
Arguments
filenames |
filename to be imported. |
format |
file format |
to |
import to pcm-class or pfm-class |
Value
a list of object pcm-class or pfm-class
Author(s)
Jianhong Ou
Examples
1 2 | path <- system.file("extdata", package = "motifStack")
importMatrix(dir(path, "*.pcm", full.names = TRUE))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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