cpgcount: Call C programs to R.
In methylMnM: detect different methylation level (DMR)

Description Usage Arguments Value Author(s) Examples

Call C programs to R for calculate which CpG are contained in MRE-CpG.

1 2	cpgcount(data2, data3, cpg2, cpg3, datalength, cpglength, count=rep(0,cpglength))

`data2`	Start position of each MRE-CpG.
`data3`	End position of each MRE-CpG.
`cpg2`	Start position of each CpG.
`cpg3`	End position of each CpG.
`datalength`	The number of MRE-CpG.
`cpglength`	The number of MRE-CpG.
`count`	MRE-CpG count of each CpG.

MRE-CpG count of each CpG.

Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

  cpg<-matrix( 1:800, nrow=400 )
  cpg[,2]<-cpg[,1]+2
  data<-cpg[3:100,]
  data[,1]<-data[,1]-1
  data[,2]<-data[,2]+1
  f <- cpgcount(data[,1], data[,2], cpg[,1], cpg[,2], length(data[,1]),
 length(cpg[,2]), count=rep(0,length(cpg[,2])))