mock_query_df: Example Query Data Frame

In metagenomeFeatures: Exploration of marker-gene sequence taxonomic annotations

Description

Example query_df for use in generating a mgFeatures-class object using the annotateFeatures MgDb-class method. The dataset contains the OTU ids and Greengenes database version 13.5 ids. Specifically, the OTU centers came from a mock community dataset from the study Bokulich et al. 2013, the OTU ids were extracted from a biom file downloaded from QIITA (https://qiita.ucsd.edu).

Usage

mock_query_df

Format

data.frame

Details

Bokulich, Nicholas A., et al. "Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing." Nature methods 10.1 (2013): 57-59.

Source

https://qiita.ucsd.edu

Examples

data(mock_query_df)

metagenomeFeatures documentation built on Nov. 8, 2020, 5:18 p.m.