make_mgdb_sqlite: make_mgdb_sqlite
In metagenomeFeatures: Exploration of marker-gene sequence taxonomic annotations

make_mgdb_sqlite

1	make_mgdb_sqlite(db_name, db_file, taxa_tbl, seqs)

`db_name`	reference database name
`db_file`	file path for sqlite database
`taxa_tbl`	data frame with database taxonomy data
`seqs`	database sequences, path to fasta file or DNAStringSet object

writes SQLite file

## Not run: 
make_mgdb_sqlite(db_name = "greengenes13.8_85",
    db_file = db_file,
    taxa_tbl = taxa_tbl,
    seqs = seqs)

## End(Not run)

metagenomeFeatures documentation built on Nov. 8, 2020, 5:18 p.m.

metagenomeFeatures index

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