metagenomeFeatures: Exploration of marker-gene sequence taxonomic annotations

metagenomeFeatures was developed for use in exploring the taxonomic annotations for a marker-gene metagenomic sequence dataset. The package can be used to explore the taxonomic composition of a marker-gene database or annotated sequences from a marker-gene metagenome experiment.

README.md Exploring sequence and phylogenetic diversity for a taxonomic group of interest. metagenomeFeatures classes and methods. Using metagenomeFeatures to Retrieve Feature Data.

Vignettes Man pages API and functions Files

Package details
Author	Nathan D. Olson, Joseph Nathaniel Paulson, Hector Corrada Bravo
Bioconductor views	Annotation ImmunoOncology Infrastructure Metagenomics Microbiome Sequencing Software
Maintainer	Nathan D. Olson <nolson@umiacs.umd.edu>
License	Artistic-2.0
Version	2.10.0
URL	https://github.com/HCBravoLab/metagenomeFeatures
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("metagenomeFeatures")`