center: Matrix centering
In lfa: Logistic Factor Analysis for Categorical Data
Description
Usage
Arguments
Value
Examples
Description
C routine to row-center a matrix
Usage
1
center(A)
Arguments
A
matrix
Value
matrix same dimensions A but row centered
Examples
1
Example output
EUROPE EUROPE EUROPE CENTRAL_SOUTH_ASIA
rs4050954 1.018867925 0.018867925 0.018867925 0.018867925
rs302665 -0.377358491 0.622641509 0.622641509 1.622641509
rs2899446 0.723270440 0.723270440 -1.276729560 0.723270440
rs10069940 0.213836478 0.213836478 0.213836478 -0.786163522
rs6114921 0.515723270 0.515723270 -0.484276730 0.515723270
rs201718 -0.830188679 0.169811321 0.169811321 1.169811321
rs1335715 -0.188679245 -0.188679245 -0.188679245 -0.188679245
rs17006588 -0.490566038 0.509433962 -0.490566038 -0.490566038
rs3885909 0.194968553 0.194968553 0.194968553 0.194968553
rs986457 -0.251572327 0.748427673 -0.251572327 -0.251572327
rs13111401 0.006289308 0.006289308 0.006289308 0.006289308
rs13187858 0.641509434 -0.358490566 -0.358490566 -0.358490566
rs994185 -0.452830189 -0.452830189 -0.452830189 -0.452830189
rs10057812 -1.006289308 -0.006289308 0.993710692 -0.006289308
rs409169 -0.509433962 -0.509433962 -0.509433962 -0.509433962
rs1530933 0.754716981 -0.245283019 -0.245283019 -0.245283019
rs1007833 -0.201257862 0.798742138 -0.201257862 -0.201257862
rs2328383 1.459119497 -0.540880503 -0.540880503 -0.540880503
rs12637969 0.880503145 0.880503145 0.880503145 0.880503145
rs16886475 0.584905660 -0.415094340 0.584905660 0.584905660
rs7726513 -0.628930818 -0.628930818 0.371069182 0.371069182
rs7660731 -0.226415094 -0.226415094 -0.226415094 -0.226415094
rs2188355 -0.716981132 -0.716981132 -0.716981132 0.283018868
rs2189711 -0.981132075 0.018867925 0.018867925 0.018867925
rs9300822 -0.949685535 0.050314465 -0.949685535 -0.949685535
rs722441 0.232704403 0.232704403 1.232704403 0.232704403
rs4919944 -0.402515723 0.597484277 0.597484277 0.597484277
rs12790798 -0.786163522 -0.786163522 0.213836478 -0.786163522
rs8100137 -0.710691824 0.289308176 -0.710691824 1.289308176
rs843408 1.238993711 0.238993711 0.238993711 1.238993711
rs1355274 0.628930818 -0.371069182 -0.371069182 0.628930818
rs8091944 0.088050314 -0.911949686 -0.911949686 0.088050314
rs918807 0.591194969 0.591194969 0.591194969 -0.408805031
rs2463951 -0.522012579 0.477987421 -0.522012579 -0.522012579
rs2033754 -0.559748428 -0.559748428 1.440251572 -0.559748428
rs1349528 -0.534591195 -0.534591195 -0.534591195 -0.534591195
rs2355092 -0.308176101 0.691823899 0.691823899 -0.308176101
rs6817648 -0.106918239 0.893081761 0.893081761 -0.106918239
rs667805 0.572327044 -0.427672956 -0.427672956 0.572327044
rs2164510 -0.220125786 -0.220125786 -0.220125786 -0.220125786
rs1898721 0.735849057 -1.264150943 -0.264150943 -1.264150943
rs6698799 -0.578616352 0.421383648 -0.578616352 -0.578616352
rs751206 -0.433962264 -0.433962264 -0.433962264 -0.433962264
rs10431855 0.213836478 1.213836478 -0.786163522 1.213836478
rs11781405 0.754716981 -0.245283019 0.754716981 -0.245283019
rs10281623 -0.169811321 0.830188679 -0.169811321 -0.169811321
rs12920388 1.088050314 1.088050314 1.088050314 1.088050314
rs4943964 -0.861635220 -0.861635220 0.138364780 1.138364780
rs17030041 -0.257861635 0.742138365 -0.257861635 -0.257861635
rs12691283 -0.484276730 -0.484276730 -0.484276730 0.515723270
rs167701 0.528301887 0.528301887 0.528301887 -0.471698113
rs11177758 0.276729560 0.276729560 1.276729560 0.276729560
rs1920972 -0.157232704 0.842767296 -0.157232704 -0.157232704
rs1400015 0.433962264 0.433962264 0.433962264 -0.566037736
rs8002385 -0.289308176 -0.289308176 -0.289308176 -0.289308176
rs6106434 1.119496855 0.119496855 -0.880503145 1.119496855
rs13203409 -0.767295597 -0.767295597 0.232704403 -0.767295597
rs4918508 -0.547169811 -1.547169811 0.452830189 0.452830189
rs10504369 -0.295597484 0.704402516 -0.295597484 -0.295597484
rs4842386 0.641509434 0.641509434 1.641509434 0.641509434
rs3847362 -0.238993711 -0.238993711 0.761006289 -0.238993711
rs882089 0.415094340 -0.584905660 -0.584905660 1.415094340
rs6017999 -0.226415094 -0.226415094 -0.226415094 -1.226415094
rs2794256 -0.572327044 0.427672956 0.427672956 -0.572327044
rs9653492 -0.452830189 -0.452830189 0.547169811 0.547169811
rs3110228 -0.226415094 -0.226415094 -0.226415094 1.773584906
rs13061796 -0.251572327 0.748427673 -0.251572327 1.748427673
rs4045957 -0.735849057 0.264150943 -0.735849057 -0.735849057
rs11044373 0.672955975 -0.327044025 0.672955975 1.672955975
rs1917717 -0.679245283 -0.679245283 0.320754717 -0.679245283
rs2833890 -0.559748428 -0.559748428 -0.559748428 0.440251572
rs1468559 -0.446540881 -0.446540881 1.553459119 -0.446540881
rs12876549 -0.364779874 0.635220126 -0.364779874 -0.364779874
rs205153 0.817610063 0.817610063 -0.182389937 -0.182389937
rs17587994 -0.113207547 -1.113207547 -1.113207547 -1.113207547
rs17042380 -0.289308176 -0.289308176 -0.289308176 1.710691824
rs1407273 -0.446540881 -0.446540881 -0.446540881 -0.446540881
rs2044732 -0.251572327 -0.251572327 -0.251572327 -0.251572327
rs1858944 0.377358491 0.377358491 -0.622641509 0.377358491
rs11629965 0.377358491 0.377358491 -0.622641509 0.377358491
rs10783764 -0.396226415 -0.396226415 -0.396226415 0.603773585
rs1438220 -0.522012579 -0.522012579 1.477987421 -0.522012579
rs2589858 0.264150943 0.264150943 1.264150943 -0.735849057
rs1933463 -0.333333333 0.666666667 -0.333333333 -0.333333333
rs917491 0.150943396 -0.849056604 1.150943396 0.150943396
rs7100619 0.723270440 -0.276729560 -0.276729560 -0.276729560
rs10497398 0.729559748 -0.270440252 0.729559748 -0.270440252
rs991446 0.402515723 0.402515723 -0.597484277 0.402515723
rs2190095 -0.100628931 -0.100628931 0.899371069 0.899371069
rs12658801 -0.358490566 -0.358490566 -0.358490566 -0.358490566
rs8045131 -0.327044025 -0.327044025 -0.327044025 -0.327044025
rs7718156 -0.427672956 -0.427672956 0.572327044 -0.427672956
rs4398094 0.075471698 1.075471698 1.075471698 -0.924528302
rs10158007 -0.182389937 0.817610063 -0.182389937 -0.182389937
rs4660436 -0.245283019 0.754716981 0.754716981 -0.245283019
rs998318 -0.408805031 1.591194969 -0.408805031 0.591194969
rs6455920 -0.257861635 -0.257861635 -0.257861635 -0.257861635
rs11008578 0.666666667 -0.333333333 -0.333333333 -0.333333333
rs9424114 0.811320755 0.811320755 -0.188679245 0.811320755
rs1552966 -0.402515723 0.597484277 -0.402515723 -0.402515723
rs4900529 -0.339622642 -0.339622642 -0.339622642 0.660377358
rs9575459 -0.855345912 -0.855345912 -0.855345912 0.144654088
rs6755601 -0.540880503 -0.540880503 0.459119497 0.459119497
rs7615155 -1.025157233 -0.025157233 -1.025157233 -0.025157233
rs11638258 -0.333333333 -0.333333333 0.666666667 0.666666667
rs2709050 -0.974842767 0.025157233 -0.974842767 -0.974842767
rs1401618 -0.427672956 -0.427672956 0.572327044 0.572327044
rs11647724 -0.245283019 -0.245283019 0.754716981 0.754716981
rs8093464 -0.264150943 -0.264150943 -0.264150943 -0.264150943
rs11098270 0.823899371 -0.176100629 -0.176100629 -0.176100629
rs3131916 0.226415094 0.226415094 -0.773584906 0.226415094
rs1323619 -0.377358491 0.622641509 -1.377358491 -0.377358491
rs489835 1.283018868 -0.716981132 0.283018868 0.283018868
rs2284689 -0.547169811 0.452830189 -0.547169811 -0.547169811
rs10173535 0.660377358 -0.339622642 -0.339622642 0.660377358
rs1861072 -0.880503145 0.119496855 0.119496855 -0.880503145
rs1521662 -0.691823899 1.308176101 -0.691823899 -0.691823899
rs2453299 -0.232704403 -0.232704403 -0.232704403 0.767295597
rs10163652 0.301886792 -0.698113208 -0.698113208 -0.698113208
rs960700 0.672955975 0.672955975 -0.327044025 -0.327044025
rs1325372 0.440251572 0.440251572 0.440251572 0.440251572
rs4737326 0.748427673 -0.251572327 -0.251572327 0.748427673
rs7689930 -0.421383648 0.578616352 0.578616352 -0.421383648
rs1496286 0.176100629 0.176100629 0.176100629 0.176100629
rs280839 0.094339623 -0.905660377 -0.905660377 -0.905660377
rs16859667 -0.691823899 -0.691823899 -0.691823899 -0.691823899
rs2264759 0.358490566 0.358490566 0.358490566 1.358490566
rs1363749 0.415094340 0.415094340 0.415094340 -0.584905660
rs2618101 -0.421383648 -0.421383648 0.578616352 -0.421383648
rs239328 -0.364779874 -0.364779874 0.635220126 0.635220126
rs728081 0.314465409 0.314465409 -0.685534591 0.314465409
rs4748702 0.220125786 1.220125786 -0.779874214 -0.779874214
rs2165894 -0.509433962 -0.509433962 -0.509433962 -0.509433962
rs2876086 -0.597484277 -0.597484277 -0.597484277 -0.597484277
rs351260 -0.383647799 0.616352201 0.616352201 -0.383647799
rs2201331 1.226415094 -0.773584906 -0.773584906 0.226415094
rs13126098 0.188679245 -0.811320755 -0.811320755 -0.811320755
rs6472867 -0.025157233 -0.025157233 -0.025157233 -1.025157233
rs2045838 0.138364780 -0.861635220 0.138364780 1.138364780
rs6769343 -0.566037736 -0.566037736 -0.566037736 0.433962264
rs12620956 -0.628930818 0.371069182 -0.628930818 0.371069182
rs2049015 -0.157232704 0.842767296 -0.157232704 -0.157232704
rs11152377 -0.427672956 0.572327044 0.572327044 -0.427672956
rs9378220 0.616352201 -0.383647799 -0.383647799 0.616352201
rs10870994 1.773584906 -0.226415094 0.773584906 -0.226415094
rs1404744 -0.949685535 -0.949685535 -0.949685535 -0.949685535
rs2955359 0.264150943 1.264150943 0.264150943 -0.735849057
rs7210758 0.364779874 0.364779874 -0.635220126 -0.635220126
rs4890510 0.377358491 -0.622641509 0.377358491 0.377358491
rs258770 -0.666666667 -0.666666667 -0.666666667 0.333333333
rs7341999 -0.257861635 -0.257861635 -0.257861635 -0.257861635
rs3795818 0.610062893 -0.389937107 -0.389937107 1.610062893
rs427361 -0.389937107 1.610062893 -0.389937107 -0.389937107
rs133280 -0.358490566 -0.358490566 -0.358490566 0.641509434
rs9890637 -0.522012579 0.477987421 0.477987421 -0.522012579
rs497793 0.503144654 -0.496855346 1.503144654 0.503144654
rs861029 -0.421383648 1.578616352 -0.421383648 1.578616352
rs11804627 -0.295597484 -0.295597484 -0.295597484 -0.295597484
rs7275197 -0.408805031 0.591194969 0.591194969 -0.408805031
rs768882 0.691823899 0.691823899 -0.308176101 -0.308176101
rs6437375 0.830188679 0.830188679 -0.169811321 0.830188679
rs11684967 -0.364779874 -0.364779874 -0.364779874 -0.364779874
rs17068931 0.540880503 0.540880503 -0.459119497 0.540880503
rs11111747 -0.232704403 -0.232704403 -0.232704403 -0.232704403
rs883724 0.635220126 -0.364779874 -0.364779874 -0.364779874
rs2806967 -0.729559748 -0.729559748 -0.729559748 -0.729559748
rs9329172 -1.547169811 0.452830189 -0.547169811 -0.547169811
rs10175380 -0.144654088 -1.144654088 -1.144654088 -0.144654088
rs4720303 0.584905660 0.584905660 -0.415094340 1.584905660
rs281380 -0.823899371 0.176100629 0.176100629 1.176100629
rs2426003 -0.301886792 -0.301886792 -0.301886792 0.698113208
rs860750 -0.276729560 -0.276729560 -0.276729560 -0.276729560
rs12895126 -0.679245283 -0.679245283 -0.679245283 -0.679245283
rs2390536 0.716981132 -0.283018868 -0.283018868 -0.283018868
rs10183112 -0.201257862 -0.201257862 -0.201257862 1.798742138
rs17712036 0.798742138 1.798742138 -0.201257862 -0.201257862
rs10860170 -0.301886792 0.698113208 -0.301886792 -0.301886792
rs2117398 -0.584905660 0.415094340 0.415094340 0.415094340
rs10813080 0.194968553 0.194968553 0.194968553 -0.805031447
rs2469764 -0.559748428 0.440251572 -0.559748428 0.440251572
rs1149528 0.660377358 -0.339622642 -0.339622642 -0.339622642
rs11714628 0.352201258 0.352201258 0.352201258 0.352201258
rs3770090 -0.295597484 -0.295597484 -0.295597484 -0.295597484
rs4434187 -0.691823899 -0.691823899 0.308176101 0.308176101
rs4801891 0.396226415 -0.603773585 0.396226415 -0.603773585
rs11067986 0.314465409 0.314465409 0.314465409 0.314465409
rs11634401 1.471698113 0.471698113 -0.528301887 -0.528301887
rs1120439 0.968553459 -1.031446541 0.968553459 -1.031446541
rs1532197 -0.452830189 -0.452830189 -0.452830189 -0.452830189
rs12530984 -0.528301887 0.471698113 -0.528301887 0.471698113
rs16945612 -0.232704403 -0.232704403 0.767295597 -0.232704403
rs11073678 -0.238993711 -0.238993711 -0.238993711 0.761006289
rs1545496 1.106918239 0.106918239 1.106918239 -0.893081761
rs2869675 -0.301886792 -0.301886792 -0.301886792 -0.301886792
rs707093 -0.389937107 -0.389937107 -0.389937107 -0.389937107
rs6725973 -0.194968553 -0.194968553 -0.194968553 -0.194968553
rs8129919 0.069182390 0.069182390 0.069182390 0.069182390
rs7531214 0.427672956 0.427672956 0.427672956 -0.572327044
rs10480523 -0.295597484 0.704402516 -0.295597484 -0.295597484
rs661392 0.138364780 0.138364780 1.138364780 0.138364780
rs10189774 -0.314465409 1.685534591 0.685534591 -0.314465409
rs17607307 0.584905660 -0.415094340 1.584905660 1.584905660
rs10776740 -0.899371069 1.100628931 0.100628931 1.100628931
rs11670672 1.628930818 -0.371069182 -0.371069182 -0.371069182
rs10933902 1.314465409 0.314465409 0.314465409 -0.685534591
rs10515690 1.446540881 -0.553459119 -0.553459119 0.446540881
rs2685230 0.798742138 -0.201257862 -1.201257862 0.798742138
rs998346 -0.584905660 -0.584905660 -0.584905660 -0.584905660
rs2736741 -0.257861635 -0.257861635 -0.257861635 -0.257861635
rs6991080 0.081761006 -0.918238994 0.081761006 0.081761006
rs1350876 -0.628930818 -0.628930818 -0.628930818 0.371069182
rs2075277 -0.647798742 0.352201258 0.352201258 -0.647798742
rs928294 -0.352201258 -0.352201258 -0.352201258 -0.352201258
rs3965461 0.465408805 0.465408805 -0.534591195 -0.534591195
rs11178351 0.641509434 0.641509434 0.641509434 1.641509434
rs6983078 0.578616352 0.578616352 -0.421383648 -0.421383648
rs10012289 1.169811321 0.169811321 0.169811321 0.169811321
rs3856318 0.773584906 -0.226415094 0.773584906 -0.226415094
rs9867817 0.320754717 1.320754717 0.320754717 -0.679245283
rs10758522 -0.320754717 -0.320754717 -0.320754717 -0.320754717
rs16963005 -0.515723270 0.484276730 -0.515723270 0.484276730
rs7989618 0.540880503 -0.459119497 -0.459119497 0.540880503
rs401654 -0.257861635 -0.257861635 -0.257861635 0.742138365
rs325921 0.666666667 0.666666667 -0.333333333 -0.333333333
rs491014 -0.522012579 -0.522012579 0.477987421 1.477987421
rs10503848 -0.905660377 0.094339623 0.094339623 0.094339623
rs3795550 1.106918239 0.106918239 0.106918239 -0.893081761
rs11097475 -1.113207547 -0.113207547 -0.113207547 -0.113207547
rs4664187 0.018867925 0.018867925 0.018867925 -0.981132075
rs2331796 0.440251572 0.440251572 -0.559748428 1.440251572
rs13331974 -0.408805031 0.591194969 -0.408805031 -0.408805031
rs2021997 -0.427672956 0.572327044 0.572327044 0.572327044
rs4932227 -0.320754717 0.679245283 0.679245283 -0.320754717
rs11779911 0.729559748 0.729559748 -0.270440252 -0.270440252
rs7081523 -0.584905660 -0.584905660 0.415094340 -0.584905660
rs4595752 -0.528301887 -0.528301887 0.471698113 -0.528301887
rs1533956 -0.786163522 0.213836478 1.213836478 0.213836478
rs2184835 -0.628930818 -0.628930818 -0.628930818 -0.628930818
rs7308621 0.201257862 0.201257862 0.201257862 1.201257862
rs4949290 -0.245283019 -0.245283019 -0.245283019 -0.245283019
rs11087269 -0.867924528 -0.867924528 1.132075472 -0.867924528
rs2092058 -0.748427673 -0.748427673 -0.748427673 -0.748427673
rs6674304 -0.421383648 -0.421383648 -0.421383648 -0.421383648
rs2615950 0.415094340 0.415094340 0.415094340 -0.584905660
rs7843621 0.698113208 -0.301886792 -0.301886792 -0.301886792
rs13031025 0.157232704 0.157232704 -0.842767296 -0.842767296
rs9803860 -0.157232704 -0.157232704 0.842767296 -1.157232704
rs10197283 0.006289308 0.006289308 0.006289308 1.006289308
rs3890837 0.396226415 1.396226415 -0.603773585 -0.603773585
rs2302019 -0.018867925 -0.018867925 -0.018867925 0.981132075
rs6922792 1.805031447 -0.194968553 0.805031447 -0.194968553
rs6442290 -0.352201258 -0.352201258 -1.352201258 -0.352201258
rs9660912 0.855345912 -1.144654088 -0.144654088 -1.144654088
rs10879389 0.603773585 -0.396226415 0.603773585 0.603773585
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rs822711 0.377358491 0.377358491 0.377358491 0.377358491 -0.622641509
rs2217223 0.672955975 0.672955975 -0.327044025 0.672955975 0.672955975
rs2945787 -0.597484277 -0.597484277 -0.597484277 -0.597484277 -0.597484277
rs13105491 -0.238993711 -0.238993711 0.761006289 -0.238993711 -0.238993711
rs3862505 -0.742138365 -0.742138365 0.257861635 0.257861635 0.257861635
rs827388 -0.402515723 0.597484277 -0.402515723 0.597484277 0.597484277
rs10809473 -0.232704403 -0.232704403 -0.232704403 0.767295597 -0.232704403
rs255959 0.679245283 0.679245283 -0.320754717 0.679245283 -0.320754717
rs32951 -0.427672956 1.572327044 -0.427672956 0.572327044 1.572327044
rs3906823 -0.264150943 -0.264150943 -0.264150943 -0.264150943 -0.264150943
rs1148823 -0.383647799 1.616352201 -0.383647799 0.616352201 -0.383647799
rs551219 -0.308176101 0.691823899 0.691823899 0.691823899 -0.308176101
rs2837990 -0.503144654 -0.503144654 0.496855346 0.496855346 -0.503144654
rs2019249 -0.704402516 -0.704402516 -0.704402516 0.295597484 -0.704402516
rs6558668 -0.037735849 -0.037735849 0.962264151 -1.037735849 -0.037735849
rs977121 -0.314465409 -0.314465409 0.685534591 0.685534591 -0.314465409
rs2823596 -0.578616352 1.421383648 0.421383648 0.421383648 -0.578616352
rs6816693 -0.207547170 -0.207547170 0.792452830 -0.207547170 -0.207547170
rs4534617 -0.503144654 -0.503144654 -0.503144654 1.496855346 0.496855346
rs881386 -0.427672956 -0.427672956 0.572327044 1.572327044 -0.427672956
rs11583096 0.471698113 -0.528301887 0.471698113 -0.528301887 -0.528301887
rs985695 -0.364779874 -0.364779874 0.635220126 -0.364779874 -0.364779874
rs10161640 -0.496855346 0.503144654 -0.496855346 0.503144654 -0.496855346
rs2158680 0.389937107 -0.610062893 -0.610062893 0.389937107 -0.610062893
rs1432513 -0.383647799 -0.383647799 -1.383647799 -0.383647799 0.616352201
rs7005696 -0.666666667 -0.666666667 1.333333333 -0.666666667 -0.666666667
rs12637520 -0.352201258 0.647798742 0.647798742 -0.352201258 -0.352201258
rs7114703 0.251572327 -0.748427673 1.251572327 0.251572327 0.251572327
rs2076075 -0.446540881 -0.446540881 -0.446540881 -0.446540881 0.553459119
rs1106867 -0.327044025 -0.327044025 -0.327044025 -0.327044025 -0.327044025
rs17053385 -0.440251572 -0.440251572 -0.440251572 0.559748428 -0.440251572
rs7943852 0.333333333 0.333333333 -0.666666667 -0.666666667 0.333333333
rs6597886 0.685534591 -0.314465409 -0.314465409 -0.314465409 -0.314465409
rs6813139 -0.509433962 -0.509433962 -0.509433962 -0.509433962 0.490566038
rs164466 1.088050314 0.088050314 -0.911949686 1.088050314 0.088050314
rs1217390 -0.805031447 0.194968553 0.194968553 -0.805031447 -0.805031447
rs879904 -0.591194969 -0.591194969 0.408805031 0.408805031 -0.591194969
rs6683419 -1.188679245 0.811320755 -1.188679245 0.811320755 -0.188679245
rs16998035 -0.433962264 -0.433962264 -0.433962264 -0.433962264 -0.433962264
rs4426332 -0.201257862 -0.201257862 -0.201257862 -0.201257862 -0.201257862
rs13101823 0.396226415 0.396226415 0.396226415 -0.603773585 0.396226415
rs3843600 -0.836477987 1.163522013 1.163522013 -0.836477987 0.163522013
rs8048343 -0.207547170 0.792452830 0.792452830 -0.207547170 -0.207547170
rs4867922 -0.025157233 0.974842767 0.974842767 -0.025157233 -1.025157233
rs1867951 0.377358491 0.377358491 0.377358491 0.377358491 -0.622641509
rs2938787 -0.182389937 -0.182389937 1.817610063 -0.182389937 -0.182389937
rs4880048 0.238993711 1.238993711 0.238993711 0.238993711 1.238993711
rs1998678 0.534591195 -0.465408805 -0.465408805 -0.465408805 -0.465408805
rs11701162 -1.383647799 -0.383647799 -0.383647799 -1.383647799 0.616352201
rs1897499 -0.283018868 -0.283018868 -0.283018868 -0.283018868 0.716981132
rs11653964 -0.301886792 0.698113208 -0.301886792 -0.301886792 0.698113208
rs825074 -0.415094340 -0.415094340 -0.415094340 -0.415094340 -0.415094340
rs9957078 0.471698113 -0.528301887 -0.528301887 0.471698113 0.471698113
rs10238696 -0.251572327 -0.251572327 -0.251572327 0.748427673 -0.251572327
rs1106431 1.320754717 -0.679245283 -0.679245283 0.320754717 0.320754717
rs17687523 0.289308176 0.289308176 0.289308176 0.289308176 1.289308176
rs1965402 -0.295597484 0.704402516 0.704402516 -0.295597484 -1.295597484
rs766492 -0.509433962 -0.509433962 -0.509433962 0.490566038 -0.509433962
rs7554543 -0.207547170 0.792452830 -0.207547170 -0.207547170 -0.207547170
rs7902161 0.515723270 0.515723270 0.515723270 -0.484276730 0.515723270
rs2047740 0.062893082 0.062893082 1.062893082 1.062893082 -0.937106918
rs6053925 -0.371069182 -0.371069182 0.628930818 -0.371069182 -0.371069182
rs11002088 -0.295597484 -0.295597484 0.704402516 -0.295597484 -0.295597484
rs11768573 -0.333333333 0.666666667 -0.333333333 -0.333333333 -0.333333333
rs17338519 -0.276729560 -0.276729560 0.723270440 -0.276729560 -0.276729560
rs3752689 1.138364780 -0.861635220 0.138364780 -0.861635220 0.138364780
rs4818568 -0.427672956 0.572327044 -0.427672956 -0.427672956 -0.427672956
rs2088829 -0.477987421 -0.477987421 0.522012579 -0.477987421 -0.477987421
rs2049726 -0.691823899 0.308176101 1.308176101 0.308176101 0.308176101
rs7824413 0.150943396 -0.849056604 -0.849056604 -0.849056604 1.150943396
rs12143543 -0.383647799 1.616352201 0.616352201 -0.383647799 0.616352201
rs11710169 0.509433962 -1.490566038 0.509433962 -0.490566038 0.509433962
rs6856312 -0.220125786 0.779874214 0.779874214 -0.220125786 -0.220125786
rs4698247 0.723270440 -0.276729560 -0.276729560 -0.276729560 0.723270440
rs6777503 0.578616352 -0.421383648 0.578616352 -0.421383648 0.578616352
rs6505114 0.433962264 1.433962264 0.433962264 0.433962264 -0.566037736
rs6117672 1.698113208 -0.301886792 -0.301886792 -0.301886792 -0.301886792
rs1160437 -0.194968553 -0.194968553 -0.194968553 -0.194968553 -0.194968553
rs11232900 -0.597484277 -0.597484277 0.402515723 0.402515723 -0.597484277
rs7329327 0.345911950 0.345911950 0.345911950 0.345911950 0.345911950
rs6579864 -0.251572327 -0.251572327 0.748427673 0.748427673 -0.251572327
rs9327012 0.572327044 -0.427672956 -1.427672956 0.572327044 -0.427672956
rs1487562 -0.213836478 -0.213836478 -0.213836478 1.786163522 -0.213836478
rs2998074 -0.327044025 -0.327044025 -0.327044025 -0.327044025 0.672955975
rs12528795 0.176100629 0.176100629 -0.823899371 -0.823899371 0.176100629
rs6471532 -0.358490566 0.641509434 -0.358490566 -0.358490566 -0.358490566
rs17236713 0.704402516 -0.295597484 -0.295597484 -0.295597484 -0.295597484
rs1519307 0.094339623 -0.905660377 -0.905660377 0.094339623 0.094339623
rs10845109 0.264150943 0.264150943 1.264150943 -0.735849057 0.264150943
rs10918295 0.421383648 -0.578616352 0.421383648 -0.578616352 -0.578616352
rs783373 0.037735849 -0.962264151 -0.962264151 0.037735849 -0.962264151
rs4281935 0.591194969 0.591194969 -0.408805031 1.591194969 -0.408805031
rs1323597 0.547169811 -0.452830189 -0.452830189 0.547169811 -0.452830189
rs4407280 -0.509433962 -0.509433962 -0.509433962 -0.5094
lfa documentation built on Nov. 8, 2020, 7:30 p.m.
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Description Usage Arguments Value Examples
Description
C routine to row-center a matrix
Usage
1 | center(A)
|
Arguments
A |
matrix |
Value
matrix same dimensions A but row centered
Examples
1 |
Example output
EUROPE EUROPE EUROPE CENTRAL_SOUTH_ASIA
rs4050954 1.018867925 0.018867925 0.018867925 0.018867925
rs302665 -0.377358491 0.622641509 0.622641509 1.622641509
rs2899446 0.723270440 0.723270440 -1.276729560 0.723270440
rs10069940 0.213836478 0.213836478 0.213836478 -0.786163522
rs6114921 0.515723270 0.515723270 -0.484276730 0.515723270
rs201718 -0.830188679 0.169811321 0.169811321 1.169811321
rs1335715 -0.188679245 -0.188679245 -0.188679245 -0.188679245
rs17006588 -0.490566038 0.509433962 -0.490566038 -0.490566038
rs3885909 0.194968553 0.194968553 0.194968553 0.194968553
rs986457 -0.251572327 0.748427673 -0.251572327 -0.251572327
rs13111401 0.006289308 0.006289308 0.006289308 0.006289308
rs13187858 0.641509434 -0.358490566 -0.358490566 -0.358490566
rs994185 -0.452830189 -0.452830189 -0.452830189 -0.452830189
rs10057812 -1.006289308 -0.006289308 0.993710692 -0.006289308
rs409169 -0.509433962 -0.509433962 -0.509433962 -0.509433962
rs1530933 0.754716981 -0.245283019 -0.245283019 -0.245283019
rs1007833 -0.201257862 0.798742138 -0.201257862 -0.201257862
rs2328383 1.459119497 -0.540880503 -0.540880503 -0.540880503
rs12637969 0.880503145 0.880503145 0.880503145 0.880503145
rs16886475 0.584905660 -0.415094340 0.584905660 0.584905660
rs7726513 -0.628930818 -0.628930818 0.371069182 0.371069182
rs7660731 -0.226415094 -0.226415094 -0.226415094 -0.226415094
rs2188355 -0.716981132 -0.716981132 -0.716981132 0.283018868
rs2189711 -0.981132075 0.018867925 0.018867925 0.018867925
rs9300822 -0.949685535 0.050314465 -0.949685535 -0.949685535
rs722441 0.232704403 0.232704403 1.232704403 0.232704403
rs4919944 -0.402515723 0.597484277 0.597484277 0.597484277
rs12790798 -0.786163522 -0.786163522 0.213836478 -0.786163522
rs8100137 -0.710691824 0.289308176 -0.710691824 1.289308176
rs843408 1.238993711 0.238993711 0.238993711 1.238993711
rs1355274 0.628930818 -0.371069182 -0.371069182 0.628930818
rs8091944 0.088050314 -0.911949686 -0.911949686 0.088050314
rs918807 0.591194969 0.591194969 0.591194969 -0.408805031
rs2463951 -0.522012579 0.477987421 -0.522012579 -0.522012579
rs2033754 -0.559748428 -0.559748428 1.440251572 -0.559748428
rs1349528 -0.534591195 -0.534591195 -0.534591195 -0.534591195
rs2355092 -0.308176101 0.691823899 0.691823899 -0.308176101
rs6817648 -0.106918239 0.893081761 0.893081761 -0.106918239
rs667805 0.572327044 -0.427672956 -0.427672956 0.572327044
rs2164510 -0.220125786 -0.220125786 -0.220125786 -0.220125786
rs1898721 0.735849057 -1.264150943 -0.264150943 -1.264150943
rs6698799 -0.578616352 0.421383648 -0.578616352 -0.578616352
rs751206 -0.433962264 -0.433962264 -0.433962264 -0.433962264
rs10431855 0.213836478 1.213836478 -0.786163522 1.213836478
rs11781405 0.754716981 -0.245283019 0.754716981 -0.245283019
rs10281623 -0.169811321 0.830188679 -0.169811321 -0.169811321
rs12920388 1.088050314 1.088050314 1.088050314 1.088050314
rs4943964 -0.861635220 -0.861635220 0.138364780 1.138364780
rs17030041 -0.257861635 0.742138365 -0.257861635 -0.257861635
rs12691283 -0.484276730 -0.484276730 -0.484276730 0.515723270
rs167701 0.528301887 0.528301887 0.528301887 -0.471698113
rs11177758 0.276729560 0.276729560 1.276729560 0.276729560
rs1920972 -0.157232704 0.842767296 -0.157232704 -0.157232704
rs1400015 0.433962264 0.433962264 0.433962264 -0.566037736
rs8002385 -0.289308176 -0.289308176 -0.289308176 -0.289308176
rs6106434 1.119496855 0.119496855 -0.880503145 1.119496855
rs13203409 -0.767295597 -0.767295597 0.232704403 -0.767295597
rs4918508 -0.547169811 -1.547169811 0.452830189 0.452830189
rs10504369 -0.295597484 0.704402516 -0.295597484 -0.295597484
rs4842386 0.641509434 0.641509434 1.641509434 0.641509434
rs3847362 -0.238993711 -0.238993711 0.761006289 -0.238993711
rs882089 0.415094340 -0.584905660 -0.584905660 1.415094340
rs6017999 -0.226415094 -0.226415094 -0.226415094 -1.226415094
rs2794256 -0.572327044 0.427672956 0.427672956 -0.572327044
rs9653492 -0.452830189 -0.452830189 0.547169811 0.547169811
rs3110228 -0.226415094 -0.226415094 -0.226415094 1.773584906
rs13061796 -0.251572327 0.748427673 -0.251572327 1.748427673
rs4045957 -0.735849057 0.264150943 -0.735849057 -0.735849057
rs11044373 0.672955975 -0.327044025 0.672955975 1.672955975
rs1917717 -0.679245283 -0.679245283 0.320754717 -0.679245283
rs2833890 -0.559748428 -0.559748428 -0.559748428 0.440251572
rs1468559 -0.446540881 -0.446540881 1.553459119 -0.446540881
rs12876549 -0.364779874 0.635220126 -0.364779874 -0.364779874
rs205153 0.817610063 0.817610063 -0.182389937 -0.182389937
rs17587994 -0.113207547 -1.113207547 -1.113207547 -1.113207547
rs17042380 -0.289308176 -0.289308176 -0.289308176 1.710691824
rs1407273 -0.446540881 -0.446540881 -0.446540881 -0.446540881
rs2044732 -0.251572327 -0.251572327 -0.251572327 -0.251572327
rs1858944 0.377358491 0.377358491 -0.622641509 0.377358491
rs11629965 0.377358491 0.377358491 -0.622641509 0.377358491
rs10783764 -0.396226415 -0.396226415 -0.396226415 0.603773585
rs1438220 -0.522012579 -0.522012579 1.477987421 -0.522012579
rs2589858 0.264150943 0.264150943 1.264150943 -0.735849057
rs1933463 -0.333333333 0.666666667 -0.333333333 -0.333333333
rs917491 0.150943396 -0.849056604 1.150943396 0.150943396
rs7100619 0.723270440 -0.276729560 -0.276729560 -0.276729560
rs10497398 0.729559748 -0.270440252 0.729559748 -0.270440252
rs991446 0.402515723 0.402515723 -0.597484277 0.402515723
rs2190095 -0.100628931 -0.100628931 0.899371069 0.899371069
rs12658801 -0.358490566 -0.358490566 -0.358490566 -0.358490566
rs8045131 -0.327044025 -0.327044025 -0.327044025 -0.327044025
rs7718156 -0.427672956 -0.427672956 0.572327044 -0.427672956
rs4398094 0.075471698 1.075471698 1.075471698 -0.924528302
rs10158007 -0.182389937 0.817610063 -0.182389937 -0.182389937
rs4660436 -0.245283019 0.754716981 0.754716981 -0.245283019
rs998318 -0.408805031 1.591194969 -0.408805031 0.591194969
rs6455920 -0.257861635 -0.257861635 -0.257861635 -0.257861635
rs11008578 0.666666667 -0.333333333 -0.333333333 -0.333333333
rs9424114 0.811320755 0.811320755 -0.188679245 0.811320755
rs1552966 -0.402515723 0.597484277 -0.402515723 -0.402515723
rs4900529 -0.339622642 -0.339622642 -0.339622642 0.660377358
rs9575459 -0.855345912 -0.855345912 -0.855345912 0.144654088
rs6755601 -0.540880503 -0.540880503 0.459119497 0.459119497
rs7615155 -1.025157233 -0.025157233 -1.025157233 -0.025157233
rs11638258 -0.333333333 -0.333333333 0.666666667 0.666666667
rs2709050 -0.974842767 0.025157233 -0.974842767 -0.974842767
rs1401618 -0.427672956 -0.427672956 0.572327044 0.572327044
rs11647724 -0.245283019 -0.245283019 0.754716981 0.754716981
rs8093464 -0.264150943 -0.264150943 -0.264150943 -0.264150943
rs11098270 0.823899371 -0.176100629 -0.176100629 -0.176100629
rs3131916 0.226415094 0.226415094 -0.773584906 0.226415094
rs1323619 -0.377358491 0.622641509 -1.377358491 -0.377358491
rs489835 1.283018868 -0.716981132 0.283018868 0.283018868
rs2284689 -0.547169811 0.452830189 -0.547169811 -0.547169811
rs10173535 0.660377358 -0.339622642 -0.339622642 0.660377358
rs1861072 -0.880503145 0.119496855 0.119496855 -0.880503145
rs1521662 -0.691823899 1.308176101 -0.691823899 -0.691823899
rs2453299 -0.232704403 -0.232704403 -0.232704403 0.767295597
rs10163652 0.301886792 -0.698113208 -0.698113208 -0.698113208
rs960700 0.672955975 0.672955975 -0.327044025 -0.327044025
rs1325372 0.440251572 0.440251572 0.440251572 0.440251572
rs4737326 0.748427673 -0.251572327 -0.251572327 0.748427673
rs7689930 -0.421383648 0.578616352 0.578616352 -0.421383648
rs1496286 0.176100629 0.176100629 0.176100629 0.176100629
rs280839 0.094339623 -0.905660377 -0.905660377 -0.905660377
rs16859667 -0.691823899 -0.691823899 -0.691823899 -0.691823899
rs2264759 0.358490566 0.358490566 0.358490566 1.358490566
rs1363749 0.415094340 0.415094340 0.415094340 -0.584905660
rs2618101 -0.421383648 -0.421383648 0.578616352 -0.421383648
rs239328 -0.364779874 -0.364779874 0.635220126 0.635220126
rs728081 0.314465409 0.314465409 -0.685534591 0.314465409
rs4748702 0.220125786 1.220125786 -0.779874214 -0.779874214
rs2165894 -0.509433962 -0.509433962 -0.509433962 -0.509433962
rs2876086 -0.597484277 -0.597484277 -0.597484277 -0.597484277
rs351260 -0.383647799 0.616352201 0.616352201 -0.383647799
rs2201331 1.226415094 -0.773584906 -0.773584906 0.226415094
rs13126098 0.188679245 -0.811320755 -0.811320755 -0.811320755
rs6472867 -0.025157233 -0.025157233 -0.025157233 -1.025157233
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